CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.4338.3.S1_at

Gene name
Homology with Arabidopsis Similar to At5g27170: unknown protein (HF=3e+0)

Module size 6 genes

NF 0.59

%ile 78.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.96 Zm.4338.3.S1_at AW000126 - - 3e+0 At5g27170 unknown protein O.I. H.G. S.X.
0.91 99.0 0.96 Zm.1402.1.S1_at BF729248 - - 4e+0 At1g29040 unknown protein O.I. H.G. S.X.
0.80 94.0 0.96 Zm.4350.1.A1_at AW091239 - - 1e+0 At5g49334 unknown protein O.I. H.G. S.X.
0.73 89.9 0.96 Zm.13325.1.S1_at BQ279643 - - 3e+0 At4g27140 2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1 O.I. H.G. S.X.
0.37 42.3 0.96 Zm.13484.1.S1_at AY108906.1 - - 3e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.32 33.4 0.96 Zm.3875.1.S1_at BQ539306 - - 2e-31 At1g50200 ALATS (ALANYL-TRNA SYNTHETASE) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.4 99.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3 99.3 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8 99.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6 99.2 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4 99.1 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1 98.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6 98.7 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2 98.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6 98.6 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5 96.3 GSM320461 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g27170, orthologous to the query gene, Zm.4338.3.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.79 89.1 At5g27170 832775 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast O.I. H.G. S.X.
0.47 61.2 At2g14380 3768243 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.35 41.6 At3g43280 823403 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.34 39.8 At5g28930 833018 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.25 22.6 At1g60460 842341 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.23 19.3 At5g30470 3770969 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.21 15.8 At5g24250 832492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.20 14.4 At1g06140 837123 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. H.G. S.X.
0.20 14.4 At3g22870 821859 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. H.G. S.X.
0.16 8.8 At3g09060 820059 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBA O.I. H.G. S.X.
0.16 8.8 At1g40230 840758 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.15 7.8 At5g28210 832897 mRNA capping enzyme family protein F:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, mRNA guanylyltransferase activity, polynucleotide 5'-phosphatase activity;P:protein amino acid dephosphorylation, mRNA processing, dephosphorylation, mRNA capping;C:nucleus;MOFVPB O.I. H.G. S.X.
0.15 7.8 At3g42600 823272 transposable element gene F:unknown;P:unknown;C:unknown O.I. H.G. S.X.
0.14 6.8 At2g20380 816557 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.12 4.9 At4g26680 828775 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFBA O.I. H.G. S.X.
0.09 2.8 At5g02990 831714 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBVFA O.I. H.G. S.X.
0.04 0.9 At1g50350 841457 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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