Co-expression analysis

Gene ID	Zm.4327.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g12770: heat shock protein binding (HF=1e-15)
Module size	14 genes
NF	0.61
%ile	82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	76.1	0.97	Zm.4327.1.S1_at	BI993026	-	-	1e-15	At4g12770	heat shock protein binding	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.98	Zm.3657.1.A1_s_at	BG874068	-	-	1e+0	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.98	Zm.6103.3.S1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.98	Zm.12244.1.A1_at	AY105130.1	-	-	4e-8	At2g37500	arginine biosynthesis protein ArgJ family	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.98	Zm.6915.1.S1_at	AW256266	hypothetical protein LOC100280116	-	5e-1	At5g64160	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.6916.1.S1_at	AW067358	hypothetical protein LOC100273981	-	9e-13	At5g66750	CHR1 (CHROMATIN REMODELING 1)	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.98	Zm.16462.1.A1_at	AY347711.1	Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase	-	7e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.6180.1.S1_at	CF031407	hypothetical protein LOC100277615	-	1e-5	At4g10430	-	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.1682.1.A1_a_at	CK368815	hypothetical protein LOC100193549 /// ran-binding protein 1	-	6e-10	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.2157.7.S1_at	CF019402	ribosomal protein S11	-	1e-38	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.7017.1.A1_at	BM072990	hypothetical protein LOC100272933	-	2e+0	At1g31760	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	Zm.3743.2.S1_at	AY109746.1	-	-	2e+0	At5g04045	Expressed protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.12150.2.S1_at	AI619383	hypothetical protein LOC100273319	-	9e-1	At4g31340	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.3743.2.A1_a_at	CF624095	hypothetical protein LOC100274177	-	2e+0	At5g04045	Expressed protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage