Co-expression analysis

Gene ID	Zm.4323.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g49150: unknown protein (HF=2e+0)
Module size	13 genes
NF	0.56
%ile	73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	58.4	0.97	Zm.4323.1.S1_at	AY110219.1	-	-	2e+0	At1g49150	unknown protein	O.I.	H.G.	S.X.	Please select
0.85	95.9	0.98	Zm.6103.3.S1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	O.I.	H.G.	S.X.	Please select
0.85	95.9	0.98	Zm.6916.1.S1_at	AW067358	hypothetical protein LOC100273981	-	9e-13	At5g66750	CHR1 (CHROMATIN REMODELING 1)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.3657.1.A1_s_at	BG874068	-	-	1e+0	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.6915.1.S1_at	AW256266	hypothetical protein LOC100280116	-	5e-1	At5g64160	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	Zm.12244.1.A1_at	AY105130.1	-	-	4e-8	At2g37500	arginine biosynthesis protein ArgJ family	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	Zm.2157.7.S1_at	CF019402	ribosomal protein S11	-	1e-38	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.98	Zm.16462.1.A1_at	AY347711.1	Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase	-	7e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.98	Zm.12150.2.S1_at	AI619383	hypothetical protein LOC100273319	-	9e-1	At4g31340	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.7017.1.A1_at	BM072990	hypothetical protein LOC100272933	-	2e+0	At1g31760	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.3743.2.S1_at	AY109746.1	-	-	2e+0	At5g04045	Expressed protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.98	Zm.10174.1.A1_at	AY111125.1	-	-	4e+0	At2g47370	-	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.98	Zm.8953.1.A1_at	AY104644.1	hypothetical protein LOC100280204	-	1e-3	At5g18630	lipase class 3 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.2	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.7	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage