Co-expression analysis

Gene ID Zm.4278.1.A1_at
Gene name hypothetical protein LOC100279402
Homology with ArabidopsisSimilar to At5g05550: transcription factor (HF=1e+1)
Module size 6 genes
NF 0.55
%ile 72.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.4278.1.A1_atAI834022hypothetical protein LOC100279402-1e+1At5g05550transcription factorO.I.H.G.S.X.
0.6077.80.98Zm.12656.1.S1_atCF010887--5e+0At5g07020proline-rich family proteinO.I.H.G.S.X.
0.5065.70.98Zm.6941.1.A1_atCF638044--4e-1At3g46770transcriptional factor B3 family proteinO.I.H.G.S.X.
0.4455.70.98Zm.18115.1.A1_atCN845273ring domain containing protein-5e-1At2g23780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4455.70.98Zm.2922.1.A1_atCO532813--9e+0At4g21865unknown proteinO.I.H.G.S.X.
0.2318.60.98Zm.14149.1.A1_atAY111524.1--1e+0At5g55135unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7590.80.97Zm.1989.1.S1_atAW566298hypothetical protein LOC100193882-3e-14At2g41970protein kinase, putativeO.I.H.G.S.X.
0.6077.80.98Zm.7569.1.A1_atBM347275--1e+0At1g69880ATH8 (thioredoxin H-type 8)O.I.H.G.S.X.
0.5976.10.96Zm.3504.1.A1_atBM073847chloroplast ribonuclease III domain protein-2e-2At4g37510ribonuclease III family proteinO.I.H.G.S.X.
0.5976.10.97Zm.377.1.A1_atAI714846shaggy kinase homolog-2e-35At5g26751ATSK11O.I.H.G.S.X.
0.5571.60.97Zm.3384.1.A1_x_atBI319306subtilisin-chymotrypsin inhibitor CI-1B /// subtilisin-chymotrypsin inhibitor CI-1B-9e+0At5g65687transporter-relatedO.I.H.G.S.X.
0.5571.60.97Zm.13774.1.A1_atAF457952.1--1e+1Atmg00010-O.I.H.G.S.X.
0.5369.10.97Zm.3080.1.A1_atBM382308IAA13 - auxin-responsive Aux/IAA family member-3e-15At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)O.I.H.G.S.X.
0.5369.10.97Zm.3885.1.S1_atCK145224Pectin methylesterase1-6e-2At3g06830pectinesterase family proteinO.I.H.G.S.X.
0.5065.70.97Zm.2248.1.A1_atAW330703--7e-5At1g32060PRK (PHOSPHORIBULOKINASE)O.I.H.G.S.X.
0.5065.70.97Zm.16076.1.S1_a_atCF244160hypothetical protein LOC100191361-8e-4At5g63220unknown proteinO.I.H.G.S.X.
0.5065.70.97Zm.3773.1.A1_atAY110209.1Hypothetical protein LOC100193094-4e+0At4g18620-O.I.H.G.S.X.
0.5065.70.98Zm.7728.1.A1_atBM079644--3e-3At2g33700protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.4861.30.97Zm.954.1.S1_atAY107260.1hypothetical protein LOC100274537-1e+0At1g05055GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2)O.I.H.G.S.X.
0.4352.80.96Zm.1735.1.S1_atAY103687.1photosystem I reaction center subunit III-2e-10At1g31330PSAF (photosystem I subunit F)O.I.H.G.S.X.
0.4352.80.97Zm.1046.1.S1_atCF633990--2e+0At5g28610-O.I.H.G.S.X.
0.4352.80.98Zm.8175.1.A1_atBM382448--5e-6At2g39350ABC transporter family proteinO.I.H.G.S.X.
0.4251.30.96Zm.5006.1.A1_atAI600356protein binding protein-5e-1At5g10650zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4251.30.97Zm.3712.1.S1_atAW506785Hypothetical protein LOC100216583-6e-2At1g69430unknown proteinO.I.H.G.S.X.
0.4048.50.97Zm.12309.1.S1_atCA403435ABA-induced protein-5e-1At5g29560calcium ion bindingO.I.H.G.S.X.
0.4048.50.97Zm.9943.1.A1_atBI674800cyclase-2e-1At1g44542cyclase family proteinO.I.H.G.S.X.
0.4048.50.97Zm.18247.1.S1_atAY110411.1Hypothetical protein LOC100192004-2e-30At4g17190FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)O.I.H.G.S.X.
0.3844.20.97Zm.17167.1.A1_a_atCK827572hypothetical protein LOC100276673-6e-1At4g01895systemic acquired resistance (SAR) regulator protein NIMIN-1-relatedO.I.H.G.S.X.
0.3844.20.97Zm.7937.1.A1_atBM080506plant viral-response family protein-1e+0At5g19140AILP1O.I.H.G.S.X.
0.3844.20.97Zm.15923.1.S1_x_atCF636877--8e-24At1g22840CYTC-1 (CYTOCHROME C-1)O.I.H.G.S.X.
0.3844.20.97Zm.7868.1.S1_atCF630485hypothetical protein LOC100216779-4e-1At1g15390PDF1A (PEPTIDE DEFORMYLASE 1A)O.I.H.G.S.X.
0.3641.30.95Zm.1353.1.A1_atAW862733PCO069699 protein-2e+0At5g13900protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3641.30.96Zm.5855.1.A1_atAY104601.1--4e-31At1g75850VPS35B (VPS35 HOMOLOG B)O.I.H.G.S.X.
0.3641.30.96Zm.16741.1.S1_atAY108913.1--8e-7At5g19050unknown proteinO.I.H.G.S.X.
0.3641.30.96ZmAffx.1193.1.A1_atBE025345--3e+0At3g13140hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3641.30.97Zm.13668.1.A1_atAY107056.1--8e-1At2g21490LEA (DEHYDRIN LEA)O.I.H.G.S.X.
0.3641.30.97Zm.18297.1.S1_atBG320462hypothetical protein LOC100216767-1e-27At3g54050fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putativeO.I.H.G.S.X.
0.3641.30.97Zm.16102.1.A1_atCF244374--8e-9At5g48530unknown proteinO.I.H.G.S.X.
0.3641.30.97Zm.2077.1.A1_atCA401374--1e-1At3g59820calcium-binding mitochondrial protein-relatedO.I.H.G.S.X.
0.3641.30.98Zm.91.1.S1_atAY111773.1hypothetical protein LOC100192631-4e+0At4g23895pleckstrin homology (PH) domain-containing protein-relatedO.I.H.G.S.X.
0.3641.30.97Zm.5218.1.A1_atAY111426.1--3e+0At2g30130ASL5O.I.H.G.S.X.
0.3538.90.95Zm.3483.1.A1_atBG842836--3e-30At1g16720HCF173 (high chlorophyll fluorescence phenotype 173)O.I.H.G.S.X.
0.3538.90.95Zm.6393.4.A1_x_atBQ048072H1 histone-4e+0At4g33710pathogenesis-related protein, putativeO.I.H.G.S.X.
0.3538.90.96Zm.3132.2.S1_atAY109250.1hypothetical protein LOC100273073-4e-7At3g02510regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.3336.00.97Zm.17851.1.S1_atCF018132--5e+0At5g06270unknown proteinO.I.H.G.S.X.
0.3336.00.97Zm.875.2.A1_atAI668449hypothetical protein LOC100276297-1e+0At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.3336.00.98Zm.12555.1.A1_x_atAI673922--4e+0At4g28170unknown proteinO.I.H.G.S.X.
0.3233.40.96Zm.2517.5.A1_x_atCD437198z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// hypothetical protein LOC100274904 /// zein polypeptidesL2b-2e+0At5g62360invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.3131.60.96Zm.17970.1.A1_atCK827393hypothetical protein LOC100274947-5e+0At5g50930DNA bindingO.I.H.G.S.X.
0.3131.60.96Zm.3791.1.A1_atAW224984--8e-1At1g56030MIF4G domain-containing protein / U-box domain-containing proteinO.I.H.G.S.X.
0.3131.60.97Zm.14687.1.S1_atCA828256hypothetical protein LOC100272307-3e-1At2g15770glycine-rich proteinO.I.H.G.S.X.
0.3131.60.97Zm.505.2.S1_a_atAI665681glucose translocator1-8e-1Atcg00800-O.I.H.G.S.X.
0.3131.60.98Zm.5985.3.A1_a_atCF041948hypothetical protein LOC100273928-4e-28At4g16340SPK1 (SPIKE1)O.I.H.G.S.X.
0.3029.80.95ZmAffx.1070.1.S1_atAI943763--7e-1At5g03090unknown proteinO.I.H.G.S.X.
0.3029.80.96ZmAffx.586.1.S1_atAI715014--3e+0At4g24180-O.I.H.G.S.X.
0.2928.10.95ZmAffx.856.1.S1_atAI770686hypothetical protein LOC100280191-8e-1At5g06870PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.299.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.599.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.599.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.999.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.098.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.698.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.298.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320460protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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