Co-expression analysis

Gene ID Zm.4271.2.A1_at
Gene name Isoflavone reductase-like1
Homology with ArabidopsisSimilar to At3g06720: IMPA-1 (IMPORTIN ALPHA ISOFORM 1) (HF=2e-20)
Module size 6 genes
NF 0.59
%ile 78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.80.98Zm.4271.2.A1_atAY103821.1Isoflavone reductase-like1-2e-20At3g06720IMPA-1 (IMPORTIN ALPHA ISOFORM 1)O.I.H.G.S.X.
0.6785.80.98Zm.18527.1.A1_atCF630266--9e-1At3g25110AtFaTA (Arabidopsis FatA acyl-ACP thioesterase)O.I.H.G.S.X.
0.6785.80.98Zm.1382.1.S1_atBQ528972hypothetical protein LOC100194328-1e-1At4g33130-O.I.H.G.S.X.
0.5065.70.98Zm.2789.1.A1_atCO518764--5e+0At2g39960microsomal signal peptidase 25 kDa subunit, putative (SPC25)O.I.H.G.S.X.
0.4455.70.98Zm.487.1.S1_a_atAF181479.1silky1-8e-3At2g22540SVP (SHORT VEGETATIVE PHASE)O.I.H.G.S.X.
0.4251.30.98Zm.5654.1.A1_atBG874013hypothetical protein LOC100280184-5e-1At5g61200-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.98Zm.5031.1.A1_atAI600468--2e-2At5g62160AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)O.I.H.G.S.X.
0.6077.80.97Zm.3551.1.A1_atAY105376.1--5e-18At1g48490kinaseO.I.H.G.S.X.
0.6077.80.97Zm.4369.1.A1_a_atCA402639hypothetical protein LOC100276142-9e-1At4g06746RAP2.9 (related to AP2 9)O.I.H.G.S.X.
0.5571.60.97Zm.8118.1.A1_atAY107915.1aldehyde dehydrogenase 3B1-1e-1At4g37290unknown proteinO.I.H.G.S.X.
0.5571.60.98Zm.481.1.A1_atAF227632.1mismatch binding protein Mus3-2e-8At4g02070MSH6 (MUTS HOMOLOG 6)O.I.H.G.S.X.
0.4658.40.98Zm.5533.1.A1_atBM075731hypothetical protein LOC100193863-7e-2At1g27220paired amphipathic helix repeat-containing proteinO.I.H.G.S.X.
0.4455.70.98Zm.2806.1.A1_atAW067337--6e-1At2g41660MIZ1 (mizu-kussei 1)O.I.H.G.S.X.
0.4455.70.98Zm.2383.1.A1_atBG842498hypothetical protein LOC100275670-5e+0At2g13820protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.4352.80.96Zm.2392.1.A1_atBM337512hypothetical protein LOC100191519 /// hypothetical protein LOC100275274-5e+0At3g15000-O.I.H.G.S.X.
0.4048.50.97Zm.8634.2.A1_a_atBM338021lipoxygenase-1e+0At2g31710unknown proteinO.I.H.G.S.X.
0.4048.50.98Zm.9167.1.A1_atBM336636--1e+0At2g15325protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3641.30.97Zm.7518.1.A1_atBM078781--1e-4At4g10010protein kinase family proteinO.I.H.G.S.X.
0.3641.30.97Zm.8131.1.A1_atBM073037hypothetical protein LOC100216672-9e-6At1g80850methyladenine glycosylase family proteinO.I.H.G.S.X.
0.3336.00.96Zm.14500.2.S1_x_atCO526565hypothetical protein LOC100217223-2e-3At3g14390diaminopimelate decarboxylase, putative / DAP carboxylase, putativeO.I.H.G.S.X.
0.3336.00.97Zm.12175.1.A1_atAY107356.1hypothetical protein LOC100280086-1e-8At3g05760nucleic acid binding / zinc ion bindingO.I.H.G.S.X.
0.3336.00.97Zm.9580.2.S1_atAI734597--2e+0At2g31305INH3 (INHIBITOR-3)O.I.H.G.S.X.
0.3336.00.97Zm.1391.1.A1_atBM079848hypothetical protein LOC100278100-1e-1At2g14835zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3336.00.98Zm.5237.1.A1_atAY107290.1hypothetical protein LOC100273890-2e-19At1g47260GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)O.I.H.G.S.X.
0.2928.10.96Zm.14721.1.S1_atBM266947--2e-41At2g36250FTSZ2-1O.I.H.G.S.X.
0.2724.60.96Zm.13520.1.A1_atAW225023hypothetical protein LOC100191294-1e-6At3g27110peptidase M48 family proteinO.I.H.G.S.X.
0.2521.30.97Zm.6196.2.S1_atAI677134--3e+0At5g26880tRNA/rRNA methyltransferase (SpoU) family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.398.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM206287Left pulvinus control total RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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