Co-expression analysis

Gene ID	Zm.4271.2.A1_at
Gene name	Isoflavone reductase-like1
Homology with Arabidopsis	Similar to At3g06720: IMPA-1 (IMPORTIN ALPHA ISOFORM 1) (HF=2e-20)
Module size	6 genes
NF	0.59
%ile	78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.98	Zm.4271.2.A1_at	AY103821.1	Isoflavone reductase-like1	-	2e-20	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.18527.1.A1_at	CF630266	-	-	9e-1	At3g25110	AtFaTA (Arabidopsis FatA acyl-ACP thioesterase)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.1382.1.S1_at	BQ528972	hypothetical protein LOC100194328	-	1e-1	At4g33130	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.2789.1.A1_at	CO518764	-	-	5e+0	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.487.1.S1_a_at	AF181479.1	silky1	-	8e-3	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.5654.1.A1_at	BG874013	hypothetical protein LOC100280184	-	5e-1	At5g61200	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the grape gene, 1607723_at, orthologous to the query gene, Zm.4271.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1607723_at	At3g06720	-	-	5e-18	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1609123_at	At3g06720	hypothetical protein LOC100259150	-	2e-55	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1617721_at	At3g06720	-	-	1e-76	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1616784_at	At3g06720	-	-	5e-45	At3g19640	magnesium transporter CorA-like family protein (MRS2-3)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1613291_at	At3g06720	-	-	4e-4	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1607789_at	At3g06720	hypothetical protein LOC100258188	-	7e+0	At1g76460	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1618060_at	At3g06720	hypothetical protein LOC100252303	-	5e-41	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1609051_at	At3g06720	-	-	4e-32	At5g47730	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.28	37.7	1607649_at	At3g06720	-	-	4e-1	At2g37570	SLT1 (sodium- and lithium-tolerant 1)	O.I.	H.G.	S.X.	Please select
0.24	28.7	1620813_at	At3g06720	hypothetical protein LOC100245718	-	2e-8	At4g32600	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1613284_s_at	At3g06720	hypothetical protein LOC100261107	-	6e-1	At4g31030	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1609077_at	At3g06720	hypothetical protein LOC100264912	-	3e-13	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.21	24.0	1618216_at	At3g06720	hypothetical protein LOC100259302	-	5e-47	At5g08590	SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1621365_at	At3g06720	-	-	9e-69	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.18	19.4	1611833_at	At3g06720	hypothetical protein LOC100256245	-	5e+0	At2g01590	CRR3 (CHLORORESPIRATORY REDUCTION 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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