Co-expression analysis

Gene ID	Zm.4271.2.A1_at
Gene name	Isoflavone reductase-like1
Homology with Arabidopsis	Similar to At3g06720: IMPA-1 (IMPORTIN ALPHA ISOFORM 1) (HF=2e-20)
Module size	6 genes
NF	0.59
%ile	78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.98	Zm.4271.2.A1_at	AY103821.1	Isoflavone reductase-like1	-	2e-20	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.18527.1.A1_at	CF630266	-	-	9e-1	At3g25110	AtFaTA (Arabidopsis FatA acyl-ACP thioesterase)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.1382.1.S1_at	BQ528972	hypothetical protein LOC100194328	-	1e-1	At4g33130	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.2789.1.A1_at	CO518764	-	-	5e+0	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.487.1.S1_a_at	AF181479.1	silky1	-	8e-3	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.5654.1.A1_at	BG874013	hypothetical protein LOC100280184	-	5e-1	At5g61200	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the wheat gene, Ta.14200.1.S1_at, orthologous to the query gene, Zm.4271.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	90.1	Ta.14200.1.S1_at	At3g06720	-	-	1e-19	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please select
0.73	89.1	Ta.2852.1.S1_at	At3g06720	-	-	3e-72	At5g15490	UDP-glucose 6-dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.73	89.1	Ta.1406.1.S1_a_at	At3g06720	-	-	2e-10	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please select
0.70	87.2	Ta.2502.1.S1_x_at	At3g06720	HSP80-2	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	O.I.	H.G.	S.X.	Please select
0.65	83.9	Ta.28713.2.S1_at	At3g06720	-	-	3e-5	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.63	83.1	Ta.27117.2.S1_x_at	At3g06720	-	-	2e-15	At2g40205	60S ribosomal protein L41 (RPL41C)	O.I.	H.G.	S.X.	Please select
0.63	83.1	Ta.13509.2.S1_x_at	At3g06720	-	-	3e-24	At3g54560	HTA11	O.I.	H.G.	S.X.	Please select
0.61	82.0	Ta.18.1.S1_at	At3g06720	-	-	2e-113	At1g54270	EIF4A-2	O.I.	H.G.	S.X.	Please select
0.57	79.2	Ta.27401.1.S1_s_at	At3g06720	60s ribosomal protein L21	-	3e-33	At1g09690	60S ribosomal protein L21 (RPL21C)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.28855.1.S1_at	At3g06720	-	-	3e-9	At3g57490	40S ribosomal protein S2 (RPS2D)	O.I.	H.G.	S.X.	Please select
0.53	74.9	TaAffx.115437.1.A1_s_at	At3g06720	-	-	4e+0	At2g43540	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.659.1.S1_at	At3g06720	Translation elongation factor 1 alpha-subunit	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.27713.1.A1_x_at	At3g06720	elongation factor-1 alpha	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.659.1.S1_x_at	At3g06720	Translation elongation factor 1 alpha-subunit	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.27377.2.S1_at	At3g06720	-	-	2e-64	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.45	65.2	Ta.21374.2.S1_at	At3g06720	-	-	8e-66	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.2207.1.S1_at	At3g06720	-	-	2e-56	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.2539.1.S1_a_at	At3g06720	Acidic ribosomal protein	-	8e-9	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.27377.2.S1_x_at	At3g06720	-	-	2e-64	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.6294.1.S1_s_at	At3g06720	-	-	6e-1	At1g23750	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.14324.3.S1_x_at	At3g06720	-	-	1e-3	At5g27700	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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