Co-expression analysis

Gene ID	Zm.4271.2.A1_at
Gene name	Isoflavone reductase-like1
Homology with Arabidopsis	Similar to At3g06720: IMPA-1 (IMPORTIN ALPHA ISOFORM 1) (HF=2e-20)
Module size	6 genes
NF	0.59
%ile	78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.98	Zm.4271.2.A1_at	AY103821.1	Isoflavone reductase-like1	-	2e-20	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.18527.1.A1_at	CF630266	-	-	9e-1	At3g25110	AtFaTA (Arabidopsis FatA acyl-ACP thioesterase)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.1382.1.S1_at	BQ528972	hypothetical protein LOC100194328	-	1e-1	At4g33130	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.2789.1.A1_at	CO518764	-	-	5e+0	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.487.1.S1_a_at	AF181479.1	silky1	-	8e-3	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.5654.1.A1_at	BG874013	hypothetical protein LOC100280184	-	5e-1	At5g61200	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.210864.1.S1_at, orthologous to the query gene, Zm.4271.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.210864.1.S1_at	At3g06720	hypothetical protein	-	1e-64	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.2877.3.S1_s_at	At3g06720	hypothetical protein	-	2e-9	At3g15880	protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.209374.1.S1_s_at	At3g06720	hypothetical protein	-	1e-65	At2g39260	RNA binding / binding / protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.200586.1.S1_s_at	At3g06720	hypothetical protein	-	5e-46	At5g64550	loricrin-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.5963.1.S1_s_at	At3g06720	hypothetical protein	-	7e-112	At2g23980	ATCNGC6	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.131450.1.S1_at	At3g06720	hypothetical protein	-	1e-32	At2g31510	IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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