Co-expression analysis

Gene ID	Zm.4271.2.A1_at
Gene name	Isoflavone reductase-like1
Homology with Arabidopsis	Similar to At3g06720: IMPA-1 (IMPORTIN ALPHA ISOFORM 1) (HF=2e-20)
Module size	6 genes
NF	0.59
%ile	78.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.98	Zm.4271.2.A1_at	AY103821.1	Isoflavone reductase-like1	-	2e-20	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.18527.1.A1_at	CF630266	-	-	9e-1	At3g25110	AtFaTA (Arabidopsis FatA acyl-ACP thioesterase)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.1382.1.S1_at	BQ528972	hypothetical protein LOC100194328	-	1e-1	At4g33130	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.2789.1.A1_at	CO518764	-	-	5e+0	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.487.1.S1_a_at	AF181479.1	silky1	-	8e-3	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.5654.1.A1_at	BG874013	hypothetical protein LOC100280184	-	5e-1	At5g61200	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.12107.1.S1_at, orthologous to the query gene, Zm.4271.2.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	92.6	GmaAffx.12107.1.S1_at	At3g06720	-	-	6e-14	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.	Please select
0.69	86.8	GmaAffx.93620.1.S1_s_at	At3g06720	-	-	3e-19	At3g61140	FUS6 (FUSCA 6)	O.I.	H.G.	S.X.	Please select
0.65	83.8	GmaAffx.14686.2.S1_s_at	At3g06720	-	-	5e-24	At1g65650	UCH2	O.I.	H.G.	S.X.	Please select
0.59	79.5	Gma.13142.2.S1_a_at	At3g06720	-	-	2e-13	At5g15220	ribosomal protein L27 family protein	O.I.	H.G.	S.X.	Please select
0.58	78.8	GmaAffx.88721.1.S1_s_at	At3g06720	-	-	5e-12	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	O.I.	H.G.	S.X.	Please select
0.58	78.8	Gma.17539.2.S1_s_at	At3g06720	proteasome IOTA subunit	-	1e-36	At5g35590	PAA1 (PROTEASOME ALPHA SUBUNIT A 1)	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.16051.1.S1_at	At3g06720	-	-	6e-25	At3g04780	-	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.17742.1.S1_at	At3g06720	-	-	1e-12	At4g29330	DER1 (DERLIN-1)	O.I.	H.G.	S.X.	Please select
0.52	73.1	GmaAffx.90062.1.S1_s_at	At3g06720	-	-	1e-108	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	O.I.	H.G.	S.X.	Please select
0.51	72.3	GmaAffx.92455.1.S1_s_at	At3g06720	-	-	5e-34	At5g42790	PAF1	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.8031.1.S1_at	At3g06720	-	-	4e-76	At4g12590	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.92119.1.S1_s_at	At3g06720	-	-	2e-11	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	Gma.5152.2.S1_at	At3g06720	-	-	7e-11	At1g76400	ribophorin I family protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	Gma.6321.1.S1_at	At3g06720	-	-	6e-10	At5g48570	peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.48	67.7	GmaAffx.91235.1.S1_s_at	At3g06720	-	-	8e-45	At4g31300	PBA1	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.82885.1.S1_at	At3g06720	-	-	3e-70	At3g62120	tRNA synthetase class II (G, H, P and S) family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.92555.1.S1_s_at	At3g06720	-	-	2e-113	At5g20020	RAN2	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.8031.3.S1_a_at	At3g06720	-	-	8e-8	At4g12590	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.18860.1.S1_at	At3g06720	-	-	3e-20	At4g12790	ATP-binding family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.18993.1.S1_at	At3g06720	-	-	2e-60	At1g17470	ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.43	60.6	Gma.1469.1.S1_at	At3g06720	-	-	1e-8	At1g05055	GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2)	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.87490.1.S1_at	At3g06720	-	-	1e+0	At3g23635	RTFL13 (ROTUNDIFOLIA LIKE 13)	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.91569.1.S1_s_at	At3g06720	-	-	7e-52	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.48770.1.S1_at	At3g06720	-	-	5e-50	At1g18070	EF-1-alpha-related GTP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.3820.3.S1_a_at	At3g06720	-	-	3e-3	At1g30230	elongation factor 1-beta / EF-1-beta	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.56409.1.S1_at	At3g06720	-	-	1e-16	At1g08750	GPI-anchor transamidase, putative	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.17905.2.S1_at	At3g06720	-	-	8e-37	At4g01320	ATSTE24	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.2892.1.S1_at	At3g06720	-	-	3e-36	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.4229.1.S1_at	At3g06720	heat shock protein 70-related protein	-	1e-4	At1g79930	HSP91	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.59019.1.S1_at	At3g06720	-	-	1e-136	Atmg00160	-	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.82170.2.S1_at	At3g06720	-	-	4e-56	At1g10730	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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