Co-expression analysis

Gene ID Zm.419.1.S1_at
Gene name histone deacetylase
Homology with ArabidopsisSimilar to At5g63110: HDA6 (HISTONE DEACETYLASE 6) (HF=8e-26)
Module size 10 genes
NF 0.24
%ile 19.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8996.80.96Zm.419.1.S1_atAF045473.1histone deacetylase-8e-26At5g63110HDA6 (HISTONE DEACETYLASE 6)O.I.H.G.S.X.
0.5674.40.96Zm.710.1.A1_atAY103930.1--6e+0At2g18210unknown proteinO.I.H.G.S.X.
0.4455.70.96Zm.6195.1.A1_atAI668513hypothetical protein LOC100275106-4e+0At4g17790-O.I.H.G.S.X.
0.3029.80.96Zm.7166.1.A1_atAF200532.1cellulose synthase8-3e-36At4g39350CESA2 (CELLULOSE SYNTHASE A2)O.I.H.G.S.X.
0.3029.80.97Zm.14057.2.S1_atAF457961.1--8e-20At4g22910FZR2 (FIZZY-RELATED 2)O.I.H.G.S.X.
0.2318.60.98Zm.10670.1.A1_atCO529849hypothetical protein LOC100280379-1e+0At5g11410protein kinase family proteinO.I.H.G.S.X.
0.2115.50.97Zm.5048.5.S1_a_atCF634037protein disulfide isomerase-7e-29At2g47470UNE5 (UNFERTILIZED EMBRYO SAC 5)O.I.H.G.S.X.
0.1912.80.98Zm.4238.1.A1_atBM073006cleavage and polyadenylation specificity factor, 100 kDa subunit-8e-1At2g14282SCRL18 (SCR-Like 18)O.I.H.G.S.X.
0.136.80.97Zm.2119.1.A1_atAI665420--8e-5At3g23890TOPII (TOPOISOMERASE II)O.I.H.G.S.X.
0.094.00.96Zm.6569.5.A1_atCF637455--2e-1At3g01570glycine-rich protein / oleosinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.598.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320439protocol: mRNA - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320438protocol: mRNA - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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