Co-expression analysis

Gene ID Zm.4180.1.S1_at
Gene name hypothetical protein LOC100275988
Homology with ArabidopsisSimilar to At5g35530: 40S ribosomal protein S3 (RPS3C) (HF=2e+0)
Module size 7 genes
NF 0.30
%ile 28.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4658.40.95Zm.4180.1.S1_atCD964540hypothetical protein LOC100275988-2e+0At5g3553040S ribosomal protein S3 (RPS3C)O.I.H.G.S.X.
0.5571.60.97Zm.8735.1.A1_atCO520202hypothetical protein LOC100272543-6e-3At1g08290zinc finger (C2H2 type) protein (WIP3)O.I.H.G.S.X.
0.4861.30.96Zm.4719.1.A1_atBG842494hypothetical protein LOC100278138-1e+0At4g22810DNA-binding protein-relatedO.I.H.G.S.X.
0.4048.50.97Zm.16196.1.A1_atCK985484pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit-7e-6At1g20950pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-relatedO.I.H.G.S.X.
0.2318.60.96Zm.2827.1.A1_atAY108627.1--3e+0At3g51870binding / transporterO.I.H.G.S.X.
0.1811.60.96Zm.14290.1.S1_atCD998001hypothetical protein LOC100278212-2e-9At3g51610unknown proteinO.I.H.G.S.X.
0.158.60.96Zm.4473.1.A1_atAI734320--5e+0At5g56430F-box family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.898.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM253270ZM_4.5d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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