Co-expression analysis

Gene ID	Zm.4164.4.A1_a_at
Gene name
Homology with Arabidopsis	Similar to At5g53180: PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) (HF=3e+1)
Module size	6 genes
NF	0.58
%ile	77.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.4164.4.A1_a_at	BM267227	-	-	3e+1	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.1937.1.S1_at	CN845484	hypothetical protein LOC100277662	-	5e+0	At3g50800	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.6538.1.A1_at	CK348062	stress-related protein	-	7e+0	Atmg00270	-	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.564.1.S1_a_at	AF244704.1	glutathione S-transferase GST 39	-	3e-2	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.17556.1.S1_at	CK369094	hypothetical protein LOC100191272	-	1e-4	At5g36700	PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.4011.1.S1_at	AY112578.1	-	-	3e-54	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.4	98.7	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
10.9	98.5	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.6	97.9	GSM206292	Upper pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.7	97.6	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.5	96.3	GSM206291	Upper pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.6	95.2	GSM253273	ZM_4.5d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.6	95.2	GSM253249	ZM_12h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.4	94.9	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.4	94.9	GSM258191	B73 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
3.2	94.5	GSM202400	Zmet2 study 11-day seedling aerial tissue genotype B73 Rep4	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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