Co-expression analysis

Gene ID	Zm.4164.3.A1_s_at
Gene name	hypothetical protein LOC100278068
Homology with Arabidopsis	Similar to At5g36722: unknown protein (HF=6e+0)
Module size	28 genes
NF	0.20
%ile	14.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.8	0.89	Zm.4164.3.A1_s_at	CF636517	hypothetical protein LOC100278068	-	6e+0	At5g36722	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.93	Zm.1297.1.S1_at	BE345371	hypothetical protein LOC100276762	-	1e+0	At1g23670	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.91	Zm.4404.1.S1_at	CF056620	hypothetical protein LOC100273570	-	8e-9	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.92	Zm.17794.1.S1_at	CK371286	hypothetical protein LOC100274149	-	6e-6	At4g18230	-	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.95	Zm.306.1.S1_s_at	AF291748.1	HMGI/Y protein /// high mobility group I/Y-2	-	2e+0	At3g47620	AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.92	Zm.9212.1.A1_at	BM078565	-	-	1e-3	At5g23220	NIC3 (NICOTINAMIDASE 3)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.93	Zm.9440.1.A1_at	CF635755	snRK1-interacting protein 1	-	3e-14	At5g47870	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.95	Zm.800.2.A1_at	AI714523	Phosphoenolpyruvate carboxylase	-	8e-5	At3g14940	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.91	Zm.7853.1.A1_a_at	CK370316	thioesterase superfamily member 2	-	1e+0	At3g43120	auxin-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.95	Zm.19158.2.S1_a_at	BM073998	hypothetical protein LOC100273021 /// thioredoxin F-type	-	3e-11	At5g16400	ATF2	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.96	Zm.10095.1.A1_at	CF633991	chloroplast small heat shock protein	-	2e+0	At3g57062	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.95	Zm.5744.1.A1_at	BM332131	hypothetical protein LOC100272761	-	1e+0	At3g14640	CYP72A10	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	Zm.15085.1.A1_at	AI065806	-	-	4e-11	At4g14070	AAE15 (acyl-activating enzyme 15)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.94	Zm.18882.1.S1_at	CO529872	-	-	5e-1	At4g03180	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.4030.4.A1_at	CF021557	hypothetical protein LOC100194153	-	1e-19	At3g60245	60S ribosomal protein L37a (RPL37aC)	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.92	Zm.5414.1.A1_at	BQ539565	30S ribosomal protein S1	-	7e-69	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.94	Zm.9427.1.A1_at	CK347250	hypothetical protein LOC100276181	-	2e-3	At3g21710	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.95	Zm.6142.1.A1_at	AY105151.1	annexin p33	-	2e-1	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.95	Zm.18208.1.A1_at	BM338077	-	-	4e+0	At3g45245	-	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.95	Zm.1632.1.S1_at	AY104990.1	-	-	3e-3	At3g09770	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.95	Zm.9555.1.A1_at	BM347835	-	-	1e-2	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.90	Zm.4560.2.A1_a_at	AY106577.1	hypothetical protein LOC100273536	-	2e-11	At3g59350	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.96	Zm.17661.1.A1_at	CK369350	-	-	1e+0	At5g61410	RPE	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	Zm.12970.1.A1_at	CO049279	hypothetical protein LOC100193219	-	7e-7	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.95	Zm.2867.1.A1_at	AY107561.1	-	-	8e-2	At1g28190	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	3.4	0.95	Zm.12431.1.S1_at	AY106853.1	hypothetical protein LOC100217105	-	4e+0	At4g18400	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.95	Zm.11327.1.S1_at	BM348920	-	-	1e+0	At5g18404	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.93	Zm.14983.1.S1_at	AY270036.1	Na+/H+ antiporter NHX1	-	1e-14	At5g27150	NHX1 (NA+/H+ EXCHANGER)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.8	99.3	GSM253254	ZM_24h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
13.2	98.8	GSM253272	ZM_4.5d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
10.2	98.4	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
9.0	98.2	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
8.3	98.0	GSM253266	ZM_4d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
7.7	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM258207	Wf9 11-day seedling aerial tissue biological replicate 3	GSE10237	Gene expression variation among eight maize inbreds
7.3	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM253255	ZM_24h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.6	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage