Co-expression analysis

Gene ID	Zm.4161.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g23640: HGL1 (heteroglycan glucosidase 1) (HF=6e-5)
Module size	6 genes
NF	0.60
%ile	81.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	55.7	0.92	Zm.4161.1.A1_at	AY104817.1	-	-	6e-5	At3g23640	HGL1 (heteroglycan glucosidase 1)	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.93	Zm.4927.1.A1_at	AI691487	-	-	6e+0	At5g05930	guanylyl cyclase-related (GC1)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.94	Zm.13613.1.A1_at	CF623212	hypothetical protein LOC100275557	-	3e-6	At4g21490	NDB3	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.96	Zm.10092.1.A1_at	AY105279.1	hypothetical protein LOC100217059	-	7e-3	At3g43520	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.94	Zm.14435.1.S1_at	AY109360.1	60S ribosomal protein L22-2	-	3e-35	At3g05560	60S ribosomal protein L22-2 (RPL22B)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.4720.1.S1_at	AY108931.1	-	-	7e-2	At5g13910	LEP (LEAFY PETIOLE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.9	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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