Co-expression analysis

Gene ID	Zm.4131.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g20325: unknown protein (HF=1e+0)
Module size	21 genes
NF	0.47
%ile	58.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	96.8	0.99	Zm.4131.1.A1_at	AI855072	-	-	1e+0	At4g20325	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	91.1	0.99	ZmAffx.113.1.A1_at	AI665585	Hypothetical protein LOC100193950	-	3e+0	At5g63990	3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.99	Zm.2605.1.S1_at	AY105350.1	hypothetical protein LOC100192590	-	2e+0	At5g41670	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	1.00	Zm.10332.1.A1_at	BQ048110	-	-	2e+0	At3g28990	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.99	Zm.16325.1.A1_at	CF243460	hypothetical protein LOC100276031	-	3e-3	At1g29840	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.99	ZmAffx.756.1.S1_at	AI745958	-	-	8e-1	At5g15420	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	ZmAffx.220.1.A1_at	AI670228	-	-	3e+0	At4g14890	ferredoxin family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.99	ZmAffx.807.1.A1_at	AI770389	Hypothetical protein LOC100194367	-	3e+0	At1g65650	UCH2	O.I.	H.G.	S.X.	Please select
0.46	58.4	1.00	Zm.9517.1.A1_at	BM269495	-	-	2e+1	Atmg00630	-	O.I.	H.G.	S.X.	Please select
0.44	55.7	1.00	Zm.2146.1.A1_at	AW287813	-	-	5e+0	At5g35475	-	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.99	ZmAffx.833.1.A1_at	AI770565	-	-	3e+0	At4g21980	APG8A (AUTOPHAGY 8A)	O.I.	H.G.	S.X.	Please select
0.44	55.7	1.00	ZmAffx.104.1.A1_at	AI665536	hypothetical protein LOC100273079	-	8e-1	At2g34980	SETH1	O.I.	H.G.	S.X.	Please select
0.43	52.8	1.00	Zm.12405.1.A1_at	BM381554	alpha/beta hydrolase fold	-	2e+0	At1g64340	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	1.00	Zm.13745.1.S1_at	CK986027	-	-	2e-25	At5g25150	TAF5 (TBP-ASSOCIATED FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.42	51.3	1.00	Zm.16895.1.A1_at	BM075234	-	-	2e+0	At5g15100	PIN8 (PIN-FORMED 8)	O.I.	H.G.	S.X.	Please select
0.41	49.7	1.00	Zm.2684.1.A1_at	AW066853	-	-	3e+0	At1g49510	emb1273 (embryo defective 1273)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.99	ZmAffx.855.1.S1_at	AI770678	-	-	1e+1	At5g23035	-	O.I.	H.G.	S.X.	Please select
0.34	37.2	1.00	Zm.13289.1.S1_at	CA826954	-	-	7e-2	At1g22210	trehalose-6-phosphate phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	Zm.1968.1.A1_at	CF244101	MGD2	-	1e-20	At2g11810	MGDC	O.I.	H.G.	S.X.	Please select
0.33	36.0	1.00	Zm.13664.1.S1_at	BG836397	-	-	6e-17	At3g15610	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.99	Zm.17258.1.S1_at	CK369580	-	-	2e-2	At2g36100	integral membrane family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.1	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM205433	B73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage