Co-expression analysis

Gene ID Zm.41.1.S1_at
Gene name calcium dependent protein kinase1
Homology with ArabidopsisSimilar to At2g46700: calcium-dependent protein kinase, putative / CDPK, putative (HF=1e-16)
Module size 19 genes
NF 0.43
%ile 51.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9299.20.99Zm.41.1.S1_atAI600908calcium dependent protein kinase1-1e-16At2g46700calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.6381.11.00Zm.13745.1.S1_atCK986027--2e-25At5g25150TAF5 (TBP-ASSOCIATED FACTOR 5)O.I.H.G.S.X.
0.6381.10.99Zm.14471.1.A1_a_atCF01721060S ribosomal protein L7-1-8e-31At2g4412060S ribosomal protein L7 (RPL7C)O.I.H.G.S.X.
0.5065.70.99Zm.6188.2.S1_atAY108898.1hypothetical protein LOC100194248-4e-2At1g31140agl63 (AGAMOUS-LIKE 63)O.I.H.G.S.X.
0.4658.41.00ZmAffx.87.1.A1_atAI665344--1e+1At5g39330unknown proteinO.I.H.G.S.X.
0.4455.71.00Zm.16895.1.A1_atBM075234--2e+0At5g15100PIN8 (PIN-FORMED 8)O.I.H.G.S.X.
0.4352.81.00Zm.14841.1.A1_atAI491693hypothetical protein LOC100191514-2e+0At2g07681cytochrome c biogenesis protein, putativeO.I.H.G.S.X.
0.4149.70.99Zm.9517.1.A1_atBM269495--2e+1Atmg00630-O.I.H.G.S.X.
0.4149.71.00Zm.5102.1.S1_atAI600843hypothetical protein LOC100273584-9e-11At5g08020RPA70B (RPA70-KDA SUBUNIT B)O.I.H.G.S.X.
0.4048.51.00Zm.4166.1.A1_atBG841131hypothetical protein LOC100191831-1e+0At1g17145protein binding / zinc ion bindingO.I.H.G.S.X.
0.4048.51.00ZmAffx.889.1.S1_atAI770841pre-mRNA processing factor-8e-7At2g40650pre-mRNA splicing factor PRP38 family proteinO.I.H.G.S.X.
0.3945.60.99Zm.8632.1.A1_atBM268513--5e+0At3g55672-O.I.H.G.S.X.
0.3844.21.00ZmAffx.104.1.A1_atAI665536hypothetical protein LOC100273079-8e-1At2g34980SETH1O.I.H.G.S.X.
0.3641.31.00Zm.12405.1.A1_atBM381554alpha/beta hydrolase fold-2e+0At1g64340unknown proteinO.I.H.G.S.X.
0.3641.30.99Zm.34.2.S1_atAY103769.1--1e-13At5g44200CBP20 (CAP-BINDING PROTEIN 20)O.I.H.G.S.X.
0.3538.90.99Zm.9991.1.S1_atBQ619114hypothetical protein LOC100191513-7e-17At5g093002-oxoisovalerate dehydrogenase, putative / 3-methyl-2-oxobutanoate dehydrogenase, putative / branched-chain alpha-keto acid dehydrogenase E1 alpha subunit, putativeO.I.H.G.S.X.
0.3437.21.00Zm.4765.1.A1_atAW461093hypothetical protein LOC100193642-1e-4At2g33470GLTP1 (glycolipid transfer protein 1)O.I.H.G.S.X.
0.3437.21.00Zm.13664.1.S1_atBG836397--6e-17At3g15610transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2928.10.99Zm.15937.1.A1_atCO520791--5e+0At3g25200unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.598.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.196.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320467protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage