Co-expression analysis

Gene ID Zm.4078.1.A1_at
Gene name protein kinase APK1A
Homology with ArabidopsisSimilar to At3g01300: protein kinase, putative (HF=6e-16)
Module size 8 genes
NF 0.47
%ile 57.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.99Zm.4078.1.A1_atBM079694protein kinase APK1A-6e-16At3g01300protein kinase, putativeO.I.H.G.S.X.
0.5976.10.99Zm.16834.1.A1_atAY109979.1--4e-1At1g64370unknown proteinO.I.H.G.S.X.
0.5674.40.99Zm.7387.1.A1_atBM078157--2e+1At5g18403-O.I.H.G.S.X.
0.5267.30.99Zm.2946.1.S1_atCF384431--1e+0At5g41450zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4251.30.99Zm.8842.1.A1_atBM075870hypothetical protein LOC100193075-1e+0At2g40670ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)O.I.H.G.S.X.
0.4048.50.99Zm.10656.1.A1_atBQ538423hypothetical protein LOC100216802-3e+0At4g25570ACYB-2O.I.H.G.S.X.
0.3336.00.99Zm.625.1.S1_atBG841424MAP kinase phosphatase-1e-1At1g44020DC1 domain-containing proteinO.I.H.G.S.X.
0.2828.10.99Zm.14470.1.S1_a_atCA400454hypothetical protein LOC100279736 /// GTP-binding protein SAR1A-2e-19At1g09180ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7087.00.98Zm.1449.2.S1_a_atBM382632early drought induced protein-3e-1At1g45248-O.I.H.G.S.X.
0.4861.30.98Zm.14476.1.A1_a_atAY105708.1protein disulfide isomerase /// protein disulfide isomerase-1e-3At5g60640ATPDIL1-4 (PDI-LIKE 1-4)O.I.H.G.S.X.
0.4759.90.98Zm.13988.1.S1_atAY103582.1hypothetical protein LOC100279316-4e+0At1g01030NGA3 (NGATHA3)O.I.H.G.S.X.
0.4455.70.98Zm.3215.1.A1_atBG842743hypothetical protein LOC100276107-5e-1At4g25200ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)O.I.H.G.S.X.
0.4455.70.98Zm.3277.1.A1_atCO520691hypothetical protein LOC100193700-2e-8At1g75220integral membrane protein, putativeO.I.H.G.S.X.
0.4352.80.98Zm.17919.1.A1_atBG840190hypothetical protein LOC100280335-2e-2At1g76490HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)O.I.H.G.S.X.
0.4352.80.98Zm.7117.2.A1_atCF627265hypothetical protein LOC100273279-3e+0At5g40155-O.I.H.G.S.X.
0.4251.30.98Zm.3198.1.A1_a_atCF243896ubiquitin-conjugating enzyme E2-17 kDa 9 /// ubiquitin-conjugating enzyme E2-17 kDa 9 /// ubiquitin-conjugating enzyme E2-17 kDa 9-9e-59At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.4251.30.98Zm.6506.1.A1_a_atAI714910replication protein A 70 kDa DNA-binding subunit-1e-10At5g08020RPA70B (RPA70-KDA SUBUNIT B)O.I.H.G.S.X.
0.4048.50.98Zm.16922.3.A1_atAI834071Hypothetical protein LOC100192809-2e-13At1g16470PAB1 (PROTEASOME SUBUNIT PAB1)O.I.H.G.S.X.
0.4048.50.99Zm.16524.8.S1_atAI665572--3e-3At1g02405proline-rich family proteinO.I.H.G.S.X.
0.3945.60.97Zm.1792.1.A1_atAY107188.1hypothetical protein LOC100191195-1e-6At1g53120RNA-binding S4 domain-containing proteinO.I.H.G.S.X.
0.3844.20.98Zm.3303.1.A1_atAF271894.1lipoxygenase-6e-6At3g22400LOX5O.I.H.G.S.X.
0.3844.20.98Zm.3750.1.A1_atCO517698MAC/Perforin domain containing protein-3e-8At1g29690CAD1 (constitutively activated cell death 1)O.I.H.G.S.X.
0.3742.30.97Zm.6677.1.A1_atCO518319AT-hook protein 1-8e-3At4g12080DNA-binding family proteinO.I.H.G.S.X.
0.3641.30.98Zm.15891.1.S1_x_atAI714925--1e-14At5g2390060S ribosomal protein L13 (RPL13D)O.I.H.G.S.X.
0.3538.90.95Zm.7295.1.S1_atCO526541hypothetical protein LOC100276937 /// low-molecular-weight cysteine-rich protein LCR69-2e-2At2g02100LCR69 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 69)O.I.H.G.S.X.
0.3538.90.98Zm.6244.2.S1_atAI677548--8e-1At2g43350ATGPX3 (GLUTATHIONE PEROXIDASE 3)O.I.H.G.S.X.
0.3437.20.97Zm.14352.1.A1_a_atAF371280.1corn Hageman factor inhibitor /// trypsin/factor XIIA inhibitor /// Hageman factor inhibitor-2e+0At1g55780metal ion bindingO.I.H.G.S.X.
0.3336.00.98Zm.15543.1.S1_atCD219451hypothetical protein LOC100274220-4e+0At3g11580DNA-binding protein, putativeO.I.H.G.S.X.
0.3336.00.98Zm.3217.1.A1_atAY106001.1hypothetical protein LOC100193166-4e-12At1g63900zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3336.00.99Zm.1691.1.S1_a_atAY108152.1hypothetical protein LOC100191436-2e-37At2g30390FC2 (FERROCHELATASE 2)O.I.H.G.S.X.
0.3233.40.98Zm.15018.1.S1_atCD437133--6e-1At2g19150pectinesterase family proteinO.I.H.G.S.X.
0.3131.60.98Zm.17028.1.S1_atCF972440--3e-1At1g70540EDA24 (embryo sac development arrest 24)O.I.H.G.S.X.
0.3131.60.98Zm.6251.1.A1_atCD434479hypothetical protein LOC100273562-2e-28At4g22310unknown proteinO.I.H.G.S.X.
0.3131.60.99Zm.606.1.A1_atAF326493.1plasma membrane intrinsic protein2-1e-37At2g37180RD28 (RESPONSIVE TO DESICCATION 28)O.I.H.G.S.X.
0.3131.60.96Zm.2671.1.S1_atAW066803--3e+0At1g26150PERK10 (PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10)O.I.H.G.S.X.
0.3029.80.99Zm.7142.1.S1_atCF018351ubiquitin-conjugating enzyme E2-17 kDa /// ubiquitin-conjugating enzyme E2-17 kDa-7e-47At5g53300UBC10 (ubiquitin-conjugating enzyme 10)O.I.H.G.S.X.
0.3029.80.99Zm.6787.1.A1_a_atAF277454.1hypothetical protein LOC100274407 /// UMP synthase-2e-17At3g54470uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)O.I.H.G.S.X.
0.2928.10.96Zm.7050.1.A1_atAY111934.1hypothetical protein LOC100193672-2e-2At3g5575060S ribosomal protein L35a (RPL35aD)O.I.H.G.S.X.
0.2928.10.97Zm.16513.9.A1_a_atCD444572--0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.2928.10.97Zm.4062.1.A1_atCF972415peptidyl-prolyl isomerase-2e-8At5g48570peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putativeO.I.H.G.S.X.
0.2928.10.98Zm.12805.1.A1_atCA399164--1e+0At2g03550hydrolaseO.I.H.G.S.X.
0.2928.10.99Zm.2212.1.A1_atAW313404hypothetical protein LOC100276550-3e-2At5g20910zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2724.60.97Zm.2124.1.A1_atBE345138DCN1-like protein 4-5e-7At1g15860-O.I.H.G.S.X.
0.2622.70.98Zm.6806.1.A1_atAI396442--2e-1At3g45460zinc ion bindingO.I.H.G.S.X.
0.2622.70.96Zm.14502.2.A1_atBM337686hypothetical protein LOC100279657-2e-3At4g02450glycine-rich proteinO.I.H.G.S.X.
0.2622.70.98Zm.7121.2.A1_x_atAF457960.1--5e-6At3g12120FAD2 (FATTY ACID DESATURASE 2)O.I.H.G.S.X.
0.2622.70.99Zm.15932.1.A1_atAJ577238.1beta3-glucuronyltransferase-8e-1At5g28610-O.I.H.G.S.X.
0.2622.70.98Zm.16004.1.A1_atCO533006methionine aminopeptidase 1A-4e-21At2g45240MAP1A (METHIONINE AMINOPEPTIDASE 1A)O.I.H.G.S.X.
0.2622.70.98Zm.7117.1.A1_atAY104703.1--5e+0At5g28630glycine-rich proteinO.I.H.G.S.X.
0.2521.30.97Zm.15545.1.S1_atCD219247--5e+0At3g48800sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.2521.30.99Zm.3219.1.S1_a_atAY197352.1beta-expansin 9 protein-9e+0At4g32950protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.098.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.298.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage