Co-expression analysis

Gene ID Zm.4078.1.A1_at
Gene name protein kinase APK1A
Homology with ArabidopsisSimilar to At3g01300: protein kinase, putative (HF=6e-16)
Module size 8 genes
NF 0.47
%ile 57.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.99Zm.4078.1.A1_atBM079694protein kinase APK1A-6e-16At3g01300protein kinase, putativeO.I.H.G.S.X.
0.5976.10.99Zm.16834.1.A1_atAY109979.1--4e-1At1g64370unknown proteinO.I.H.G.S.X.
0.5674.40.99Zm.7387.1.A1_atBM078157--2e+1At5g18403-O.I.H.G.S.X.
0.5267.30.99Zm.2946.1.S1_atCF384431--1e+0At5g41450zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4251.30.99Zm.8842.1.A1_atBM075870hypothetical protein LOC100193075-1e+0At2g40670ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)O.I.H.G.S.X.
0.4048.50.99Zm.10656.1.A1_atBQ538423hypothetical protein LOC100216802-3e+0At4g25570ACYB-2O.I.H.G.S.X.
0.3336.00.99Zm.625.1.S1_atBG841424MAP kinase phosphatase-1e-1At1g44020DC1 domain-containing proteinO.I.H.G.S.X.
0.2828.10.99Zm.14470.1.S1_a_atCA400454hypothetical protein LOC100279736 /// GTP-binding protein SAR1A-2e-19At1g09180ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.098.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.298.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os09g0361100, orthologous to the query gene, Zm.4078.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9699.7Os09g0361100At3g01300-Protein kinase APK1A (EC 2.7.1.-)1e-70At5g15080protein kinase, putativeO.I.H.G.S.X.
0.4253.9Os02g0147800At3g01300-Homeo protein (Fragment)3e-1At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.4051.1Os02g0194000At3g01300-Myb, DNA-binding domain containing protein7e-1At4g20300unknown proteinO.I.H.G.S.X.
0.3948.3Os01g0521500At3g01300-Heat shock protein DnaJ family protein3e-10At1g65280heat shock protein bindingO.I.H.G.S.X.
0.3948.3Os08g0127300At3g01300-Hypothetical protein2e-2At5g63320-O.I.H.G.S.X.
0.3846.9Os06g0713900At3g01300-Hypothetical protein3e-2At2g35960NHL12O.I.H.G.S.X.
0.3846.9Os03g0820700At3g01300-Gag polyprotein8e-1At1g75560zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.3644.0Os03g0802800At3g01300-Hypothetical protein3e+0At5g18540unknown proteinO.I.H.G.S.X.
0.3644.0Os07g0167200At3g01300-Zinc finger POZ domain protein (Fragment)2e-1At3g03740ATBPM4 (BTB-POZ and MATH domain 4)O.I.H.G.S.X.
0.3541.7Os06g0229300At3g01300-HOX1B protein5e-7At3g19510HAT3.1O.I.H.G.S.X.
0.3338.8Os06g0206100At3g01300-Protein of unknown function DUF1296 family protein4e-4At3g13990unknown proteinO.I.H.G.S.X.
0.3338.8Os08g0383700At3g01300-Repressor protein4e-18At5g23090NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)O.I.H.G.S.X.
0.3338.8Os01g0958000At3g01300-Cell division control protein 2 homolog 2 (EC2.7.1.37) (Fragment)1e-21At5g64960CDKC2 (Cyclin dependent kinase group C 2)O.I.H.G.S.X.
0.3236.3Os06g0485100At3g01300-Conserved hypothetical protein2e-6At3g18380sequence-specific DNA binding / transcription factorO.I.H.G.S.X.
0.3236.3Os04g0465000At3g01300-Sterile alpha motif SAM domain containing protein3e+0At3g48209-O.I.H.G.S.X.
0.3134.5Os04g0672200At3g01300-Conserved hypothetical protein2e-3At2g01340unknown proteinO.I.H.G.S.X.
0.2931.1Os05g0196500At3g01300-Transcription factor jumonji, JmjN domaincontaining protein2e-12At1g08620transcription factorO.I.H.G.S.X.
0.2931.1Os02g0480900At3g01300-Ataxin-2, N-terminal domain containing protein2e+0At2g33200F-box family proteinO.I.H.G.S.X.
0.2727.5Os10g0580700At3g01300-Ankyrin repeat containing protein2e-4At4g19150ankyrin repeat family proteinO.I.H.G.S.X.
0.2727.5Os03g0818000At3g01300-Conserved hypothetical protein3e-16At5g22060ATJ2O.I.H.G.S.X.
0.2727.5Os02g0554000At3g01300-CW-type Zn-finger domain containing protein8e-1At4g14165F-box family protein-relatedO.I.H.G.S.X.
0.2625.6Os07g0101400At3g01300-MATH domain containing protein4e-3At3g03740ATBPM4 (BTB-POZ and MATH domain 4)O.I.H.G.S.X.
0.2625.6Os05g0463800At3g01300-CCAAT-binding transcription factor-like protein(Fragment)2e-16At3g53340NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)O.I.H.G.S.X.
0.2625.6Os01g0500500At3g01300-Protein of unknown function DUF632 domaincontaining protein3e-4At1g52320unknown proteinO.I.H.G.S.X.
0.2524.1Os11g0573200At3g01300-Gag polyprotein (Fragment)3e+0At3g15780unknown proteinO.I.H.G.S.X.
0.2524.1Os06g0227200At3g01300-Hypothetical protein2e+0At1g59870PEN3 (PENETRATION 3)O.I.H.G.S.X.
0.2422.4Os04g0672800At3g01300-Conserved hypothetical protein3e+0At3g21865PEX22 (peroxin 22)O.I.H.G.S.X.
0.2422.4Os08g0295000At3g01300-Conserved hypothetical protein5e-1At1g76065-O.I.H.G.S.X.
0.2321.2Os05g0352800At3g01300-Conserved hypothetical protein2e+0At5g25760PEX4 (PEROXIN4)O.I.H.G.S.X.
0.2219.4Os06g0558700At3g01300-Poly(A) polymerase, RNA-binding region domaincontaining protein6e-8At2g25850nucleotidyltransferase family proteinO.I.H.G.S.X.
0.2219.4Os03g0376800At3g01300-KH, type 1 domain containing protein1e+0At3g15990SULTR3O.I.H.G.S.X.
0.2016.5Os02g0709400At3g01300-Dek1-calpain-like protein8e-134At1g55350DEK1 (DEFECTIVE KERNEL 1)O.I.H.G.S.X.
0.1611.3Os10g0188300At3g01300-DNA polymerase, beta-like region domain containingprotein4e-1At4g38870F-box family proteinO.I.H.G.S.X.
0.138.2Os03g0788300At3g01300--3e-2At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.138.2Os07g0583700At3g01300-WRKY transcription factor 341e-21At4g26640WRKY20O.I.H.G.S.X.
0.094.9Os01g0111200At3g01300-Conserved hypothetical protein9e-11At1g26110unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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