Co-expression analysis

Gene ID Zm.4061.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g25030: zinc finger (C3HC4-type RING finger) family protein (HF=3e+0)
Module size 6 genes
NF 0.61
%ile 81.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.4061.1.S1_atAI834355--3e+0At3g25030zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6785.80.99Zm.14497.8.A1_s_atCO52746960S ribosomal protein L27 /// 60S ribosomal protein L27-2e-6At3g2223060S ribosomal protein L27 (RPL27B)O.I.H.G.S.X.
0.6179.50.99Zm.7126.2.S1_atAY110592.1--2e-9At3g51460RHD4 (ROOT HAIR DEFECTIVE4)O.I.H.G.S.X.
0.4352.80.99Zm.2142.1.A1_atCK369102hypothetical protein LOC100191429-1e-8At2g42880ATMPK20O.I.H.G.S.X.
0.4352.80.99Zm.5824.1.A1_atAI649789--2e+0At5g10680calmodulin-binding protein-relatedO.I.H.G.S.X.
0.3641.30.99Zm.5833.1.A1_atCA398697adenylate kinase-1e-2At5g47840AMK2 (Adenosine monophosphate kinase)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.80.99Zm.3937.1.S1_a_atBQ294219hypothetical protein LOC100276728-6e-4At4g25680unknown proteinO.I.H.G.S.X.
0.5674.40.99Zm.6614.1.A1_atCO533019coronatine-insensitive protein 1-1e+0At2g26030F-box family proteinO.I.H.G.S.X.
0.4861.30.99Zm.1701.1.S1_atAW399969hypothetical protein LOC100280325-9e-75At5g28840GME (GDP-D-MANNOSE 3',5'-EPIMERASE)O.I.H.G.S.X.
0.4658.40.99Zm.16527.1.A1_atCF637778hypothetical protein LOC100277800-5e-13At1g03260-O.I.H.G.S.X.
0.4455.70.99Zm.7051.1.S1_atAI833408hypothetical protein LOC100277200-1e+0At5g61997unknown proteinO.I.H.G.S.X.
0.4455.70.99Zm.14415.1.A1_a_atBM382357auxin-repressed 12.5 kDa protein-2e-9At2g33830dormancy/auxin associated family proteinO.I.H.G.S.X.
0.4455.70.99Zm.7048.1.A1_atAI677399hypothetical protein LOC100194145-6e-7At4g30996unknown proteinO.I.H.G.S.X.
0.4455.70.99Zm.6079.1.S1_atBM268227ribosomal protein L25-1e-53At2g39460RPL23AA (RIBOSOMAL PROTEIN L23AA)O.I.H.G.S.X.
0.4352.80.99Zm.14413.1.A1_atCF052725hypothetical protein LOC100279243-1e-21At5g10270CDKCO.I.H.G.S.X.
0.4352.80.99Zm.17000.1.A1_s_atCF626261hypothetical protein LOC100273843 /// 60S ribosomal protein L10-3-8e-2At2g46620AAA-type ATPase family proteinO.I.H.G.S.X.
0.4352.80.99Zm.7127.1.A1_atBM266653nonspecific lipid-transfer protein-8e+0At5g53300UBC10 (ubiquitin-conjugating enzyme 10)O.I.H.G.S.X.
0.4251.30.99Zm.6061.1.S1_atAY109202.1hypothetical protein LOC100192928-2e-46At5g20570RBX1 (RING-BOX 1)O.I.H.G.S.X.
0.4048.50.99Zm.6787.1.A1_atAF277454.1UMP synthase-2e-17At3g54470uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)O.I.H.G.S.X.
0.4048.50.99Zm.221.1.A1_atU28376.1calcium-dependent protein kinase-4e-25At3g20410CPK9 (calmodulin-domain protein kinase 9)O.I.H.G.S.X.
0.3945.60.99Zm.2949.1.A1_atCK144458nucleic acid binding protein-3e-6At2g38610KH domain-containing proteinO.I.H.G.S.X.
0.3844.20.98Zm.14529.1.S1_atAJ437283.1embryo-sac basal-endosperm layer embryo-surrounding-region-2e+0At2g11778unknown proteinO.I.H.G.S.X.
0.3844.20.99ZmAffx.289.1.A1_atAI670251--2e+1At5g15430calmodulin-binding protein-relatedO.I.H.G.S.X.
0.3742.30.99Zm.7049.1.A1_atAW331717huntingtin interacting protein K-4e-13At3g06610DNA-binding enhancer protein-relatedO.I.H.G.S.X.
0.3641.30.98Zm.17931.1.A1_atCK827676hydrogen-transporting ATP synthase, rotational mechanism-5e+0At4g34265unknown proteinO.I.H.G.S.X.
0.3641.30.98Zm.7124.1.A1_a_atBM33520250S ribosomal protein L33-2e+0At3g06320ribosomal protein L33 family proteinO.I.H.G.S.X.
0.3538.90.99Zm.6248.1.A1_atCB833922--3e+0At5g07890myosin heavy chain-relatedO.I.H.G.S.X.
0.3538.90.98Zm.6608.1.A1_atCF015737--7e+0At5g60510undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinO.I.H.G.S.X.
0.3538.90.99Zm.6246.1.S1_a_atCB042879hypothetical protein LOC100274295 /// hypothetical protein LOC100277252-1e-5At2g22080unknown proteinO.I.H.G.S.X.
0.3336.00.99Zm.2978.1.S1_atCD981283peptidyl-tRNA hydrolase-4e-10At1g18440peptidyl-tRNA hydrolase family proteinO.I.H.G.S.X.
0.3336.00.99Zm.606.1.A2_s_atAF326493.1plasma membrane integral protein ZmPIP2-2 /// plasma membrane intrinsic protein2-1e-37At2g37180RD28 (RESPONSIVE TO DESICCATION 28)O.I.H.G.S.X.
0.3233.40.98Zm.19007.1.A1_atCO528314MADS-box protein AGL66-1e-2At1g77980AGL66 (AGAMOUS-LIKE 66)O.I.H.G.S.X.
0.3233.40.99Zm.12693.1.A1_atBU499844NADH-ubiquinone oxidoreductase 10.5 kDa subunit-2e-8At5g47890NADH-ubiquinone oxidoreductase B8 subunit, putativeO.I.H.G.S.X.
0.3233.40.99Zm.16530.1.A1_atBM953023--3e-51At3g52590UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)O.I.H.G.S.X.
0.3233.40.99Zm.5823.1.A1_atCO520297hypothetical protein LOC100194104-2e-10At1g14310haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.3131.60.99Zm.7121.2.S1_atAF457960.1--5e-6At3g12120FAD2 (FATTY ACID DESATURASE 2)O.I.H.G.S.X.
0.3131.60.99Zm.661.2.A1_atAF290415.1chloroplast RNA splicing1-6e-2At3g18390EMB1865 (embryo defective 1865)O.I.H.G.S.X.
0.3029.80.99Zm.3457.1.A1_atAW171820hypothetical protein LOC100193080-2e-19At3g21640TWD1 (TWISTED DWARF 1)O.I.H.G.S.X.
0.3029.80.99Zm.16527.1.A1_s_atCF637778hypothetical protein LOC100277800-5e-13At1g03260-O.I.H.G.S.X.
0.3029.80.98Zm.16965.1.A1_atCF650305reticulon-4-interacting protein 1-1e-7At3g15090oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.3029.80.99Zm.1323.1.S1_atAY107806.1hypothetical protein LOC100275312-6e+0At3g30840unknown proteinO.I.H.G.S.X.
0.2928.10.99Zm.12692.1.S1_atBU499028--5e+0At5g59960unknown proteinO.I.H.G.S.X.
0.2928.10.99Zm.14702.1.A1_atCF628124Ribosomal protein S11-1e+0At5g46730glycine-rich proteinO.I.H.G.S.X.
0.2928.10.99Zm.16709.1.A1_atCN844137--2e+0At4g21560VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)O.I.H.G.S.X.
0.2828.10.98Zm.6885.1.S1_atAY106322.1cell division control protein 50-6e-1At3g12740ALIS1 (ALA-INTERACTING SUBUNIT 1)O.I.H.G.S.X.
0.2828.10.99Zm.6676.1.S1_atAW927976nuclear transcription factor Y subunit C-2-2e-3At1g08970NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)O.I.H.G.S.X.
0.2724.60.99Zm.15933.1.A1_atCA400453--2e-22At3g61130GAUT1 (GALACTURONOSYLTRANSFERASE 1)O.I.H.G.S.X.
0.2724.60.98RPTR-Zm-AF292559-3_s_atRPTR-Zm-AF292559-3---O.I.H.G.S.X.
0.2724.60.99Zm.12687.1.S1_x_atCO520828auxin efflux carrier component 1c-2e-7At5g57090EIR1 (ETHYLENE INSENSITIVE ROOT 1)O.I.H.G.S.X.
0.2622.70.97Zm.6616.1.A1_atCF003465--8e-1At5g66300NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)O.I.H.G.S.X.
0.2622.70.99Zm.16805.3.S1_x_atBM381902basic endochitinase C-2e-10At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.
0.2622.70.99Zm.12225.1.A1_atCA403034DIP1-2e+0At3g14340unknown proteinO.I.H.G.S.X.
0.2622.70.99Zm.16967.1.A1_atCF972515--2e+0At1g12090ELP (EXTENSIN-LIKE PROTEIN)O.I.H.G.S.X.
0.2622.70.99Zm.353.1.S1_atCF636600profilin-2e-12At4g29350PFN2 (PROFILIN 2)O.I.H.G.S.X.
0.2521.30.99Zm.2951.1.A1_atL39014.1protein disulfide isomerase-3e-16At1g21750ATPDIL1-1 (PDI-LIKE 1-1)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.599.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.599.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
19.099.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.399.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.098.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.898.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.098.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320468protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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