| Gene ID | Zm.4061.1.S1_at |
| Gene name | |
| Homology with Arabidopsis | Similar to At3g25030: zinc finger (C3HC4-type RING finger) family protein (HF=3e+0) |
| Module size | 6 genes |
| NF | 0.61 |
| %ile | 81.2 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.91 | 99.0 | 0.99 | Zm.4061.1.S1_at | AI834355 | - | - | 3e+0 | At3g25030 | zinc finger (C3HC4-type RING finger) family protein | O.I. | H.G. | S.X. | |
| 0.67 | 85.8 | 0.99 | Zm.14497.8.A1_s_at | CO527469 | 60S ribosomal protein L27 /// 60S ribosomal protein L27 | - | 2e-6 | At3g22230 | 60S ribosomal protein L27 (RPL27B) | O.I. | H.G. | S.X. | |
| 0.61 | 79.5 | 0.99 | Zm.7126.2.S1_at | AY110592.1 | - | - | 2e-9 | At3g51460 | RHD4 (ROOT HAIR DEFECTIVE4) | O.I. | H.G. | S.X. | |
| 0.43 | 52.8 | 0.99 | Zm.2142.1.A1_at | CK369102 | hypothetical protein LOC100191429 | - | 1e-8 | At2g42880 | ATMPK20 | O.I. | H.G. | S.X. | |
| 0.43 | 52.8 | 0.99 | Zm.5824.1.A1_at | AI649789 | - | - | 2e+0 | At5g10680 | calmodulin-binding protein-related | O.I. | H.G. | S.X. | |
| 0.36 | 41.3 | 0.99 | Zm.5833.1.A1_at | CA398697 | adenylate kinase | - | 1e-2 | At5g47840 | AMK2 (Adenosine monophosphate kinase) | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 20.5 | 99.3 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 20.5 | 99.3 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 19.0 | 99.2 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 17.3 | 99.1 | GSM320454 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 15.0 | 98.9 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 14.8 | 98.9 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 13.9 | 98.8 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 13.0 | 98.7 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 12.3 | 98.7 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 5.2 | 96.9 | GSM320468 | protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| VF | %ile | Gene ID | Repr. ID | Gene Name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.81 | 93.7 | 1617355_at | At3g25030 | hypothetical protein LOC100251716 | - | 9e-23 | At3g61530 | PANB2 | O.I. | H.G. | S.X. | |
| 0.96 | 99.7 | 1620964_s_at | At3g25030 | stilbene synthase /// stilbene synthase /// hypothetical protein LOC100252908 /// hypothetical LOC100253166 /// resveratrol synthase | - | 6e-1 | At5g13930 | TT4 (TRANSPARENT TESTA 4) | O.I. | H.G. | S.X. | |
| 0.92 | 99.0 | 1611190_s_at | At3g25030 | stilbene synthase /// stilbene synthase /// hypothetical protein LOC100252908 /// resveratrol synthase | - | 2e+0 | At5g13930 | TT4 (TRANSPARENT TESTA 4) | O.I. | H.G. | S.X. | |
| 0.92 | 99.0 | 1613344_at | At3g25030 | - | - | 4e+0 | At5g17650 | glycine/proline-rich protein | O.I. | H.G. | S.X. | |
| 0.92 | 99.0 | 1612722_at | At3g25030 | hypothetical protein LOC100264158 | - | 2e+0 | At4g18100 | 60S ribosomal protein L32 (RPL32A) | O.I. | H.G. | S.X. | |
| 0.91 | 98.8 | 1609696_x_at | At3g25030 | hypothetical LOC100253166 | - | 6e-1 | At5g13930 | TT4 (TRANSPARENT TESTA 4) | O.I. | H.G. | S.X. | |
| 0.91 | 98.8 | 1610850_at | At3g25030 | hypothetical LOC100253166 | - | 6e-1 | At5g13930 | TT4 (TRANSPARENT TESTA 4) | O.I. | H.G. | S.X. | |
| 0.88 | 95.4 | 1611385_at | At3g25030 | - | - | 1e+1 | At3g02540 | RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) | O.I. | H.G. | S.X. | |
| 0.83 | 94.6 | 1620342_at | At3g25030 | O-methyltransferase-like | - | 3e-5 | At5g54160 | ATOMT1 (O-METHYLTRANSFERASE 1) | O.I. | H.G. | S.X. | |
| 0.76 | 91.5 | 1609697_at | At3g25030 | Stilbene synthase 4 | - | 6e-6 | At5g13930 | TT4 (TRANSPARENT TESTA 4) | O.I. | H.G. | S.X. | |
| 0.75 | 91.3 | 1616445_at | At3g25030 | hypothetical protein LOC100262839 | - | 1e+0 | At5g67060 | HEC1 (HECATE 1) | O.I. | H.G. | S.X. | |
| 0.73 | 90.8 | 1607058_at | At3g25030 | hypothetical protein LOC100251716 | - | 7e-5 | At2g46110 | KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1) | O.I. | H.G. | S.X. |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Oryza_sativa |
| Populus_trichocarpa |
| Triticum_aestivum |
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