Co-expression analysis

Gene ID	Zm.4061.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g25030: zinc finger (C3HC4-type RING finger) family protein (HF=3e+0)
Module size	6 genes
NF	0.61
%ile	81.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	Zm.4061.1.S1_at	AI834355	-	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.14497.8.A1_s_at	CO527469	60S ribosomal protein L27 /// 60S ribosomal protein L27	-	2e-6	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.99	Zm.7126.2.S1_at	AY110592.1	-	-	2e-9	At3g51460	RHD4 (ROOT HAIR DEFECTIVE4)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.99	Zm.2142.1.A1_at	CK369102	hypothetical protein LOC100191429	-	1e-8	At2g42880	ATMPK20	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.99	Zm.5824.1.A1_at	AI649789	-	-	2e+0	At5g10680	calmodulin-binding protein-related	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.99	Zm.5833.1.A1_at	CA398697	adenylate kinase	-	1e-2	At5g47840	AMK2 (Adenosine monophosphate kinase)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.5	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.11043.1.A1_at, orthologous to the query gene, Zm.4061.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.58	79.2	Ta.11043.1.A1_at	At3g25030	-	-	2e-1	At2g30680	-	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.9429.1.S1_s_at	At3g25030	-	-	3e+0	At2g03160	ASK19 (ARABIDOPSIS SKP1-LIKE 19)	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.27989.1.A1_at	At3g25030	-	-	7e+0	At3g47430	PEX11B	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.98089.1.A1_at	At3g25030	-	-	2e-14	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.13837.1.S1_at	At3g25030	-	-	3e-2	At4g09080	TOC75-IV	O.I.	H.G.	S.X.	Please select
0.16	18.2	TaAffx.79873.1.S1_at	At3g25030	-	-	1e-2	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please select
0.12	13.3	Ta.385.1.A1_s_at	At3g25030	-	-	2e-3	At4g29510	PRMT11 (ARGININE METHYLTRANSFERASE 11)	O.I.	H.G.	S.X.	Please select
0.08	9.4	Ta.14983.1.S1_at	At3g25030	-	-	9e+0	Atcg00750	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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