Co-expression analysis

Gene ID Zm.4061.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g25030: zinc finger (C3HC4-type RING finger) family protein (HF=3e+0)
Module size 6 genes
NF 0.61
%ile 81.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.4061.1.S1_atAI834355--3e+0At3g25030zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6785.80.99Zm.14497.8.A1_s_atCO52746960S ribosomal protein L27 /// 60S ribosomal protein L27-2e-6At3g2223060S ribosomal protein L27 (RPL27B)O.I.H.G.S.X.
0.6179.50.99Zm.7126.2.S1_atAY110592.1--2e-9At3g51460RHD4 (ROOT HAIR DEFECTIVE4)O.I.H.G.S.X.
0.4352.80.99Zm.2142.1.A1_atCK369102hypothetical protein LOC100191429-1e-8At2g42880ATMPK20O.I.H.G.S.X.
0.4352.80.99Zm.5824.1.A1_atAI649789--2e+0At5g10680calmodulin-binding protein-relatedO.I.H.G.S.X.
0.3641.30.99Zm.5833.1.A1_atCA398697adenylate kinase-1e-2At5g47840AMK2 (Adenosine monophosphate kinase)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.599.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.599.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
19.099.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.399.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.098.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.898.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.098.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320468protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.219274.1.S1_at, orthologous to the query gene, Zm.4061.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6588.6PtpAffx.219274.1.S1_atAt3g25030hypothetical protein-2e-3At4g15460glycine-rich proteinO.I.H.G.S.X.
0.3357.5PtpAffx.140448.1.A1_atAt3g25030hypothetical protein-9e-18At2g13650GONST1 (Golgi Nucleotide Sugar Transporter 1)O.I.H.G.S.X.
0.2950.5PtpAffx.80080.1.S1_atAt3g25030hypothetical protein-2e-22At2g43320unknown proteinO.I.H.G.S.X.
0.2747.1PtpAffx.36910.1.A1_atAt3g25030hypothetical protein-3e+0At5g63280zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.2238.3PtpAffx.46278.1.S1_atAt3g25030--2e-14At1g28510-O.I.H.G.S.X.
0.2034.6PtpAffx.249.648.S1_atAt3g25030hypothetical protein-2e-23At4g34640SQS1 (SQUALENE SYNTHASE 1)O.I.H.G.S.X.
0.1525.3PtpAffx.147997.1.S1_a_atAt3g25030hypothetical protein-1e-14At2g19160unknown proteinO.I.H.G.S.X.
0.1423.5PtpAffx.224900.1.S1_atAt3g25030hypothetical protein-3e-4At5g35370ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingO.I.H.G.S.X.
0.1423.5PtpAffx.5423.3.S1_atAt3g25030hypothetical protein-2e-103At4g11820MVA1O.I.H.G.S.X.
0.1423.5PtpAffx.10087.1.A1_atAt3g25030hypothetical protein-1e-13At2g36310URH1 (URIDINE-RIBOHYDROLASE 1)O.I.H.G.S.X.
0.1321.6PtpAffx.205673.1.S1_x_atAt3g25030hypothetical protein-4e-1At3g24120myb family transcription factorO.I.H.G.S.X.
0.1321.6PtpAffx.224432.1.S1_x_atAt3g25030hypothetical protein-4e-126At2g16280KCS9 (3-KETOACYL-COA SYNTHASE 9)O.I.H.G.S.X.
0.1219.6PtpAffx.223364.1.S1_atAt3g25030hypothetical protein-3e-7At3g10960xanthine/uracil permease family proteinO.I.H.G.S.X.
0.0711.6PtpAffx.48962.1.S1_atAt3g25030hypothetical protein-3e-2At1g50900-O.I.H.G.S.X.
0.069.8PtpAffx.211059.1.S1_atAt3g25030hypothetical protein-1e-19At5g17980C2 domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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