Co-expression analysis

Gene ID Zm.405.1.A1_at
Gene name hypothetical LOC541674
Homology with ArabidopsisSimilar to At5g05340: peroxidase, putative (HF=2e-1)
Module size 6 genes
NF 0.54
%ile 71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.405.1.A1_atAF037034.2hypothetical LOC541674-2e-1At5g05340peroxidase, putativeO.I.H.G.S.X.
0.6077.80.99Zm.13859.1.S1_atAF439724.1methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1-1e-12At3g12290tetrahydrofolate dehydrogenase/cyclohydrolase, putativeO.I.H.G.S.X.
0.5571.60.99Zm.7122.1.A1_atAY111472.1--2e+0At1g35580CINV1 (cytosolic invertase 1)O.I.H.G.S.X.
0.4048.50.99Zm.17316.1.A1_atCK369406--4e+0At5g38317LCR58 (Low-molecular-weight cysteine-rich 58)O.I.H.G.S.X.
0.3844.20.99Zm.2952.1.A1_a_atCF629660hypothetical protein LOC100192920-2e-3At3g26680SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)O.I.H.G.S.X.
0.3336.00.99Zm.6076.1.A1_a_atAY111015.1COX VIIa-like protein-3e-1At2g21195unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.98Zm.13858.1.S1_atCO524282Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 2-5e-8At4g00620tetrahydrofolate dehydrogenase/cyclohydrolase, putativeO.I.H.G.S.X.
0.6785.80.99Zm.6075.1.A1_atBM074652--1e+0At1g12320unknown proteinO.I.H.G.S.X.
0.6381.10.98Zm.4720.1.A1_a_atAY108931.1--7e-2At5g13910LEP (LEAFY PETIOLE)O.I.H.G.S.X.
0.6077.80.99Zm.2942.1.A1_atAY105337.1replication factor C subunit 2-8e-38At1g21690emb1968 (embryo defective 1968)O.I.H.G.S.X.
0.6077.80.99Zm.16364.1.S1_atCF348928hypothetical protein LOC100192976-3e-1At1g2740060S ribosomal protein L17 (RPL17A)O.I.H.G.S.X.
0.5065.70.98Zm.6103.1.A1_atCA403951UBA and UBX domain-containing protein-2e-4At4g04210PUX4O.I.H.G.S.X.
0.5065.70.99Zm.16171.1.A1_atCF633781profilin A-4e-10At4g29350PFN2 (PROFILIN 2)O.I.H.G.S.X.
0.4658.40.99Zm.6806.1.A1_atAI396442--2e-1At3g45460zinc ion bindingO.I.H.G.S.X.
0.4658.40.99Zm.6785.1.A1_a_atBU037307S-adenosylmethionine decarboxylase proenzyme-3e-1At3g02468CPuORF9 (Conserved peptide upstream open reading frame 9)O.I.H.G.S.X.
0.4251.30.98Zm.13759.1.S1_x_atCD441609--6e-15At5g63840RSW3 (RADIAL SWELLING 3)O.I.H.G.S.X.
0.4251.30.99Zm.5357.1.S1_atAI619398hypothetical protein LOC100273070-8e-4At1g03110transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.4048.50.98Zm.6271.2.S1_a_atAY108750.1hypothetical protein LOC100280154-5e+0At5g01250alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing proteinO.I.H.G.S.X.
0.3844.20.98Zm.1232.1.S1_atBE552969kinesin light chain-3e+0At1g03730unknown proteinO.I.H.G.S.X.
0.3844.20.97Zm.17318.1.A1_atCK369904--3e-1At2g16365F-box family proteinO.I.H.G.S.X.
0.3844.20.99Zm.5355.1.A1_atAI619386hypothetical protein LOC100217125-2e-1At3g24490transcription factorO.I.H.G.S.X.
0.3641.30.98Zm.4409.1.A1_atCD964941hypothetical protein LOC100194336-8e+0At3g58100PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5)O.I.H.G.S.X.
0.3641.30.95Zm.4688.1.A1_atAI738222hypothetical protein LOC100273940-3e+0At5g01920STN8O.I.H.G.S.X.
0.3437.20.97Zm.6088.1.A1_atBM338924mitochondrial glycoprotein-1e-2At5g05990mitochondrial glycoprotein family protein / MAM33 family proteinO.I.H.G.S.X.
0.3437.20.97Zm.3208.1.S1_atCB816532hypothetical protein LOC100278608-6e-3At5g4008060S ribosomal protein-relatedO.I.H.G.S.X.
0.3336.00.97Zm.6775.1.A1_atAY105702.1ethylene response factor-2e-1At1g15360SHN1 (SHINE 1)O.I.H.G.S.X.
0.3336.00.98Zm.7121.2.A1_x_atAF457960.1--5e-6At3g12120FAD2 (FATTY ACID DESATURASE 2)O.I.H.G.S.X.
0.3233.40.97Zm.14027.1.A1_atAW499409initiator binding protein-5e-25At1g07540TRFL2 (TRF-LIKE 2)O.I.H.G.S.X.
0.3233.40.98Zm.7140.1.A1_atCK37062440S ribosomal protein S2-7e-13At3g5749040S ribosomal protein S2 (RPS2D)O.I.H.G.S.X.
0.3233.40.98Zm.13238.1.S1_atCF635234--4e+0At4g04745unknown proteinO.I.H.G.S.X.
0.3233.40.97Zm.4943.1.A1_atBG320867hypothetical protein LOC100272864-1e-1At4g27920unknown proteinO.I.H.G.S.X.
0.3233.40.98ZmAffx.1021.1.S1_atAI881561--3e+0At5g18240MYR1 (MYb-related protein 1)O.I.H.G.S.X.
0.3233.40.99Zm.2140.1.S1_atAW453259--6e-1At4g14455ATBET12O.I.H.G.S.X.
0.2928.10.97Zm.6127.1.S1_atAY110233.1--1e-9At2g03430ankyrin repeat family proteinO.I.H.G.S.X.
0.2928.10.98Zm.18065.1.A1_atCK985885--2e+0At4g29160SNF7.1O.I.H.G.S.X.
0.2928.10.99Zm.3303.1.A1_atAF271894.1lipoxygenase-6e-6At3g22400LOX5O.I.H.G.S.X.
0.2724.60.98Zm.15891.1.S1_x_atAI714925--1e-14At5g2390060S ribosomal protein L13 (RPL13D)O.I.H.G.S.X.
0.2622.70.94Zm.4557.1.S1_atCD436673hypothetical protein LOC100274167-2e-1At3g26490phototropic-responsive NPH3 family proteinO.I.H.G.S.X.
0.2622.70.96Zm.4523.1.A1_atAI734577--2e-1At3g07170sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.2622.70.96Zm.16622.1.A1_atCK144420hypothetical protein LOC100217012-1e+0At5g11630unknown proteinO.I.H.G.S.X.
0.2521.30.98Zm.3765.2.S1_atCA404497GADPH (AA 1-337)-2e-9At1g13440GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)O.I.H.G.S.X.
0.2521.30.98Zm.13239.2.A1_atBG517281hypothetical protein LOC100274453-1e-32At2g34430LHB1B1O.I.H.G.S.X.
0.2521.30.99Zm.7121.2.S1_atAF457960.1--5e-6At3g12120FAD2 (FATTY ACID DESATURASE 2)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.599.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.499.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.898.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM385710Deep-sowing 10d treatment TIBA, biological rep2GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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