Co-expression analysis

Gene ID Zm.405.1.A1_at
Gene name hypothetical LOC541674
Homology with ArabidopsisSimilar to At5g05340: peroxidase, putative (HF=2e-1)
Module size 6 genes
NF 0.54
%ile 71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.405.1.A1_atAF037034.2hypothetical LOC541674-2e-1At5g05340peroxidase, putativeO.I.H.G.S.X.
0.6077.80.99Zm.13859.1.S1_atAF439724.1methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1-1e-12At3g12290tetrahydrofolate dehydrogenase/cyclohydrolase, putativeO.I.H.G.S.X.
0.5571.60.99Zm.7122.1.A1_atAY111472.1--2e+0At1g35580CINV1 (cytosolic invertase 1)O.I.H.G.S.X.
0.4048.50.99Zm.17316.1.A1_atCK369406--4e+0At5g38317LCR58 (Low-molecular-weight cysteine-rich 58)O.I.H.G.S.X.
0.3844.20.99Zm.2952.1.A1_a_atCF629660hypothetical protein LOC100192920-2e-3At3g26680SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)O.I.H.G.S.X.
0.3336.00.99Zm.6076.1.A1_a_atAY111015.1COX VIIa-like protein-3e-1At2g21195unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.599.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.499.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.898.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM385710Deep-sowing 10d treatment TIBA, biological rep2GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os07g0677300, orthologous to the query gene, Zm.405.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6079.7Os07g0677300At5g05340-Peroxidase2e-4At3g50990electron carrier/ heme binding / peroxidaseO.I.H.G.S.X.
0.4660.9Os07g0287400At5g05340-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein6e+0At1g70895CLE17 (CLAVATA3/ESR-RELATED 17)O.I.H.G.S.X.
0.4558.8Os02g0312600At5g05340-Small GTP-binding protein (Fragment)5e-47At5g45970ARAC2 (ARABIDOPSIS RAC-LIKE 2)O.I.H.G.S.X.
0.4458.1Os05g0501300At5g05340-1,4-benzoquinone reductase5e-7At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)O.I.H.G.S.X.
0.4253.9Os01g0168800At5g05340-Alpha/beta hydrolase family protein2e-1At1g08770PRA1.E (PRENYLATED RAB ACCEPTOR 1.E)O.I.H.G.S.X.
0.4051.1Os05g0550300At5g05340-Nonspecific lipid transfer protein1e+0At1g44790ChaC-like family proteinO.I.H.G.S.X.
0.3948.3Os07g0175600At5g05340-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein3e-2At3g22600protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3644.0Os03g0135700At5g05340-Transcriptional activator Rb homolog (Fragment)3e-3At5g65640bHLH093 (beta HLH protein 93)O.I.H.G.S.X.
0.3338.8Os01g0260800At5g05340-Conserved hypothetical protein4e-1At2g19270-O.I.H.G.S.X.
0.3338.8Os09g0249000At5g05340--6e-1At1g11220unknown proteinO.I.H.G.S.X.
0.3236.3Os02g0653200At5g05340-Cupredoxin domain containing protein7e-3At1g72230plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.2931.1Os05g0245300At5g05340-Protein of unknown function DUF588 family protein7e+0Atcg00790-O.I.H.G.S.X.
0.2422.4Os01g0208400At5g05340-Conserved hypothetical protein2e-2At5g19875unknown proteinO.I.H.G.S.X.
0.2422.4Os01g0231800At5g05340-Conserved hypothetical protein2e+0At3g16220-O.I.H.G.S.X.
0.1813.7Os12g0236400At5g05340-Adenylate kinase A (EC 2.7.4.3) (ATP-AMPtransphosphorylase)1e-38At5g63400ADK1 (ADENYLATE KINASE 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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