CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.405.1.A1_at

Gene name hypothetical LOC541674
Homology with Arabidopsis Similar to At5g05340: peroxidase, putative (HF=2e-1)

Module size 6 genes

NF 0.54

%ile 71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.99 Zm.405.1.A1_at AF037034.2 hypothetical LOC541674 - 2e-1 At5g05340 peroxidase, putative O.I. H.G. S.X.
0.60 77.8 0.99 Zm.13859.1.S1_at AF439724.1 methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1 - 1e-12 At3g12290 tetrahydrofolate dehydrogenase/cyclohydrolase, putative O.I. H.G. S.X.
0.55 71.6 0.99 Zm.7122.1.A1_at AY111472.1 - - 2e+0 At1g35580 CINV1 (cytosolic invertase 1) O.I. H.G. S.X.
0.40 48.5 0.99 Zm.17316.1.A1_at CK369406 - - 4e+0 At5g38317 LCR58 (Low-molecular-weight cysteine-rich 58) O.I. H.G. S.X.
0.38 44.2 0.99 Zm.2952.1.A1_a_at CF629660 hypothetical protein LOC100192920 - 2e-3 At3g26680 SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) O.I. H.G. S.X.
0.33 36.0 0.99 Zm.6076.1.A1_a_at AY111015.1 COX VIIa-like protein - 3e-1 At2g21195 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.5 99.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4 99.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8 98.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3 98.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7 98.7 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5 98.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0 98.6 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0 98.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1 98.5 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5 95.1 GSM385710 Deep-sowing 10d treatment TIBA, biological rep2 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

A co-expression module including the rice gene, Os07g0677300, orthologous to the query gene, Zm.405.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 79.7 Os07g0677300 At5g05340 - Peroxidase 2e-4 At3g50990 electron carrier/ heme binding / peroxidase O.I. H.G. S.X.
0.46 60.9 Os07g0287400 At5g05340 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 6e+0 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) O.I. H.G. S.X.
0.45 58.8 Os02g0312600 At5g05340 - Small GTP-binding protein (Fragment) 5e-47 At5g45970 ARAC2 (ARABIDOPSIS RAC-LIKE 2) O.I. H.G. S.X.
0.44 58.1 Os05g0501300 At5g05340 - 1,4-benzoquinone reductase 5e-7 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) O.I. H.G. S.X.
0.42 53.9 Os01g0168800 At5g05340 - Alpha/beta hydrolase family protein 2e-1 At1g08770 PRA1.E (PRENYLATED RAB ACCEPTOR 1.E) O.I. H.G. S.X.
0.40 51.1 Os05g0550300 At5g05340 - Nonspecific lipid transfer protein 1e+0 At1g44790 ChaC-like family protein O.I. H.G. S.X.
0.39 48.3 Os07g0175600 At5g05340 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 3e-2 At3g22600 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.36 44.0 Os03g0135700 At5g05340 - Transcriptional activator Rb homolog (Fragment) 3e-3 At5g65640 bHLH093 (beta HLH protein 93) O.I. H.G. S.X.
0.33 38.8 Os01g0260800 At5g05340 - Conserved hypothetical protein 4e-1 At2g19270 - O.I. H.G. S.X.
0.33 38.8 Os09g0249000 At5g05340 - - 6e-1 At1g11220 unknown protein O.I. H.G. S.X.
0.32 36.3 Os02g0653200 At5g05340 - Cupredoxin domain containing protein 7e-3 At1g72230 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.29 31.1 Os05g0245300 At5g05340 - Protein of unknown function DUF588 family protein 7e+0 Atcg00790 - O.I. H.G. S.X.
0.24 22.4 Os01g0208400 At5g05340 - Conserved hypothetical protein 2e-2 At5g19875 unknown protein O.I. H.G. S.X.
0.24 22.4 Os01g0231800 At5g05340 - Conserved hypothetical protein 2e+0 At3g16220 - O.I. H.G. S.X.
0.18 13.7 Os12g0236400 At5g05340 - Adenylate kinase A (EC 2.7.4.3) (ATP-AMPtransphosphorylase) 1e-38 At5g63400 ADK1 (ADENYLATE KINASE 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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