Co-expression analysis

Gene ID Zm.405.1.A1_at
Gene name hypothetical LOC541674
Homology with ArabidopsisSimilar to At5g05340: peroxidase, putative (HF=2e-1)
Module size 6 genes
NF 0.54
%ile 71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.405.1.A1_atAF037034.2hypothetical LOC541674-2e-1At5g05340peroxidase, putativeO.I.H.G.S.X.
0.6077.80.99Zm.13859.1.S1_atAF439724.1methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1-1e-12At3g12290tetrahydrofolate dehydrogenase/cyclohydrolase, putativeO.I.H.G.S.X.
0.5571.60.99Zm.7122.1.A1_atAY111472.1--2e+0At1g35580CINV1 (cytosolic invertase 1)O.I.H.G.S.X.
0.4048.50.99Zm.17316.1.A1_atCK369406--4e+0At5g38317LCR58 (Low-molecular-weight cysteine-rich 58)O.I.H.G.S.X.
0.3844.20.99Zm.2952.1.A1_a_atCF629660hypothetical protein LOC100192920-2e-3At3g26680SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)O.I.H.G.S.X.
0.3336.00.99Zm.6076.1.A1_a_atAY111015.1COX VIIa-like protein-3e-1At2g21195unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.599.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.499.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.898.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM385710Deep-sowing 10d treatment TIBA, biological rep2GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig2119_at, orthologous to the query gene, Zm.405.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9398.7Contig2119_atAt5g05340--9e-9At1g44970peroxidase, putativeO.I.H.G.S.X.
0.7790.8Contig2562_atAt5g05340--2e-29At3g47340ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)O.I.H.G.S.X.
0.5066.9Contig5613_atAt5g05340--5e+0At2g45650AGL6 (AGAMOUS-LIKE 6)O.I.H.G.S.X.
0.4661.0Contig10682_atAt5g05340--5e-1At3g51010unknown proteinO.I.H.G.S.X.
0.4458.9Contig5614_s_atAt5g05340--3e-1At1g32380ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2)O.I.H.G.S.X.
0.4255.2Contig18324_atAt5g05340--5e+0At3g56130biotin/lipoyl attachment domain-containing proteinO.I.H.G.S.X.
0.3647.1Contig1507_atAt5g05340--0At5g12250TUB6 (BETA-6 TUBULIN)O.I.H.G.S.X.
0.3342.6Contig15773_atAt5g05340--4e+0At4g05240ubiquitin family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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