Co-expression analysis

Gene ID	Zm.405.1.A1_at
Gene name	hypothetical LOC541674
Homology with Arabidopsis	Similar to At5g05340: peroxidase, putative (HF=2e-1)
Module size	6 genes
NF	0.54
%ile	71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	Zm.405.1.A1_at	AF037034.2	hypothetical LOC541674	-	2e-1	At5g05340	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.99	Zm.13859.1.S1_at	AF439724.1	methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1	-	1e-12	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.99	Zm.7122.1.A1_at	AY111472.1	-	-	2e+0	At1g35580	CINV1 (cytosolic invertase 1)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.17316.1.A1_at	CK369406	-	-	4e+0	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.99	Zm.2952.1.A1_a_at	CF629660	hypothetical protein LOC100192920	-	2e-3	At3g26680	SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	Zm.6076.1.A1_a_at	AY111015.1	COX VIIa-like protein	-	3e-1	At2g21195	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.5	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

A co-expression module including the barley gene, Contig2119_at, orthologous to the query gene, Zm.405.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	Contig2119_at	At5g05340	-	-	9e-9	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.77	90.8	Contig2562_at	At5g05340	-	-	2e-29	At3g47340	ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig5613_at	At5g05340	-	-	5e+0	At2g45650	AGL6 (AGAMOUS-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig10682_at	At5g05340	-	-	5e-1	At3g51010	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig5614_s_at	At5g05340	-	-	3e-1	At1g32380	ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2)	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig18324_at	At5g05340	-	-	5e+0	At3g56130	biotin/lipoyl attachment domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig1507_at	At5g05340	-	-	0	At5g12250	TUB6 (BETA-6 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig15773_at	At5g05340	-	-	4e+0	At4g05240	ubiquitin family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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