Co-expression analysis

Gene ID Zm.4040.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g53785: unknown protein (HF=5e+0)
Module size 8 genes
NF 0.39
%ile 43.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.97Zm.4040.1.A1_atAI834032--5e+0At1g53785unknown proteinO.I.H.G.S.X.
0.5571.60.98Zm.16531.2.A1_a_atBG841648hypothetical protein LOC100273317-2e-12At5g35680eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putativeO.I.H.G.S.X.
0.4352.80.98Zm.7012.9.S1_a_atBE123180hypothetical protein LOC100275729-3e+0At2g27510ATFD3 (ferredoxin 3)O.I.H.G.S.X.
0.4048.50.98Zm.16594.3.A1_atCA405147--7e+0At3g21310unknown proteinO.I.H.G.S.X.
0.3641.30.98Zm.14500.1.S1_atCO525044hypothetical protein LOC100273126-3e-16At3g14390diaminopimelate decarboxylase, putative / DAP carboxylase, putativeO.I.H.G.S.X.
0.3336.00.99Zm.7012.9.A1_atBE123180--3e+0At2g27510ATFD3 (ferredoxin 3)O.I.H.G.S.X.
0.2724.60.98Zm.7582.1.A1_atBM073867hypothetical protein LOC100216795-2e+0At5g03440unknown proteinO.I.H.G.S.X.
0.2419.80.98Zm.6074.1.A1_atCF033495SINA4-1e-8At4g27880seven in absentia (SINA) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.898.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.398.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.198.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM323170Zm_SG200Dpep1_24hpi_IGSE12892Maize gene expression during infection with Ustilago maydis strain SG200Dpep1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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