Co-expression analysis

Gene ID	Zm.4034.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g55680: WD-40 repeat family protein (HF=3e-7)
Module size	6 genes
NF	0.48
%ile	60.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.98	Zm.4034.1.A1_at	CF972567	-	-	3e-7	At1g55680	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.16853.1.A1_at	AY103985.1	-	-	2e-18	At5g05920	DHS (DEOXYHYPUSINE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.5474.1.S1_at	CO531804	hypothetical protein LOC100194401	-	2e-3	At4g11450	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.14057.2.S1_x_at	AF457961.1	-	-	8e-20	At4g22910	FZR2 (FIZZY-RELATED 2)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.17182.1.A1_at	CK367985	hypothetical protein LOC100193827	-	3e-12	At5g08590	SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.4612.1.A1_at	AI737341	-	-	5e+0	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage