| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
| 0.89 | 96.8 | 0.94 | Zm.4033.1.A1_at | CF636055 | hypothetical protein LOC100273217 | - | 5e-2 | At5g43940 | HOT5 (sensitive to hot temperatures 5) | O.I. | H.G. | S.X. | |
| 0.65 | 82.1 | 0.95 | Zm.7012.3.S1_at | CO531966 | hypothetical protein LOC100275729 | - | 7e-1 | At5g65330 | AGL78 (AGAMOUS-LIKE 78) | O.I. | H.G. | S.X. | |
| 0.48 | 61.3 | 0.96 | Zm.13618.1.A1_at | AY107476.1 | - | - | 3e-1 | At2g34850 | MEE25 (maternal effect embryo arrest 25) | O.I. | H.G. | S.X. | |
| 0.43 | 52.8 | 0.95 | Zm.2113.1.S1_at | AW267577 | hypothetical protein LOC100277741 | - | 6e-6 | At3g19630 | radical SAM domain-containing protein | O.I. | H.G. | S.X. | |
| 0.39 | 45.6 | 0.94 | Zm.9582.1.A1_at | BM340978 | - | - | 2e+0 | At3g05550 | hypoxia-responsive family protein | O.I. | H.G. | S.X. | |
| 0.38 | 44.2 | 0.97 | Zm.5600.1.A1_at | BG873946 | thioredoxin H-type 5 | - | 4e-1 | At2g06850 | EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) | O.I. | H.G. | S.X. | |
| 0.37 | 42.3 | 0.94 | Zm.16700.1.A1_at | AY107355.1 | - | - | 3e-21 | At5g48460 | fimbrin-like protein, putative | O.I. | H.G. | S.X. | |
| 0.36 | 41.3 | 0.95 | Zm.16525.3.A1_x_at | AI738309 | deoxy xylulose synthase 2 | - | 7e-44 | At5g56010 | HSP81-3 | O.I. | H.G. | S.X. | |
| 0.34 | 37.2 | 0.97 | Zm.16043.1.S1_at | CF244554 | - | - | 3e+1 | At5g26262 | unknown protein | O.I. | H.G. | S.X. | |
| 0.33 | 36.0 | 0.97 | Zm.6855.1.A1_at | CK369715 | hypothetical protein LOC100193041 | - | 7e+0 | At2g14378 | - | O.I. | H.G. | S.X. | |
| 0.32 | 33.4 | 0.95 | Zm.17602.1.S1_at | CF629187 | - | - | 1e+0 | At3g58230 | unknown protein | O.I. | H.G. | S.X. | |
| 0.32 | 33.4 | 0.95 | Zm.6178.1.A1_at | AY110570.1 | auxin Efflux Carrier family protein | - | 1e+0 | At4g34960 | peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative | O.I. | H.G. | S.X. | |
| 0.31 | 31.6 | 0.96 | Zm.3167.1.S1_s_at | U89342.1 | phosphoglucomutase 2 | - | 1e-49 | At1g23190 | phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative | O.I. | H.G. | S.X. | |
| 0.29 | 28.1 | 0.96 | Zm.5964.1.S1_a_at | AY109203.1 | zinc finger C-x8-C-x5-C-x3-H type family protein | - | 6e-4 | At4g21610 | LOL2 (LSD ONE LIKE 2) | O.I. | H.G. | S.X. | |
| 0.29 | 28.1 | 0.95 | Zm.10528.1.A1_at | AY107306.1 | oxidoreductase | - | 1e+0 | At3g56130 | biotin/lipoyl attachment domain-containing protein | O.I. | H.G. | S.X. | |
| 0.28 | 28.1 | 0.97 | Zm.13889.1.A1_x_at | AF099405.1 | R2R3MYB-domain protein | - | 2e-1 | At3g13540 | ATMYB5 (MYB DOMAIN PROTEIN 5) | O.I. | H.G. | S.X. | |
| 0.27 | 24.6 | 0.94 | Zm.13032.1.A1_at | AY107007.1 | - | - | 2e+0 | At1g68907 | - | O.I. | H.G. | S.X. | |
| 0.24 | 19.8 | 0.97 | Zm.9569.1.A1_at | AY103610.1 | polyadenylate-binding protein 2 | - | 5e-7 | At5g65260 | polyadenylate-binding protein family protein / PABP family protein | O.I. | H.G. | S.X. | |
| 0.23 | 18.6 | 0.97 | Zm.730.3.A1_x_at | BM348965 | hypothetical protein LOC100193447 | - | 6e-38 | At3g46440 | UXS5 | O.I. | H.G. | S.X. | |
| 0.20 | 14.2 | 0.97 | Zm.3050.2.A1_at | CO523621 | ras-related protein Rab-18 | - | 3e+0 | At5g40700 | unknown protein | O.I. | H.G. | S.X. | |
| 0.17 | 10.6 | 0.96 | Zm.14507.1.A1_x_at | CO524101 | glycosyl hydrolases family 16 protein | - | 1e-2 | At1g11545 | xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative | O.I. | H.G. | S.X. | |
| 0.17 | 10.6 | 0.96 | Zm.4929.2.A1_a_at | AI586452 | hypothetical protein LOC100192571 | - | 3e+0 | At5g28620 | protein kinase C-related | O.I. | H.G. | S.X. | |
| 0.17 | 10.6 | 0.96 | Zm.3913.1.A1_at | CF000034 | hypothetical protein LOC100279777 | - | 3e-6 | At3g07750 | 3' exoribonuclease family domain 1-containing protein | O.I. | H.G. | S.X. | |
| 0.14 | 7.7 | 0.96 | Zm.16462.1.A1_at | AY347711.1 | Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase | - | 7e+0 | At5g57685 | AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3) | O.I. | H.G. | S.X. | |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
| 13.9 | 98.8 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes |  |
| 13.1 | 98.7 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 12.9 | 98.7 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 12.8 | 98.7 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 12.0 | 98.6 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 10.5 | 98.4 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 10.3 | 98.4 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 9.8 | 98.3 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 8.6 | 98.1 | GSM320454 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.9 | 96.7 | GSM202297 | Mo17 immature ear tissue, biological replicate 2 | GSE8176 | Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data | |
