Co-expression analysis

Gene ID Zm.4.2.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g11860: NLI interacting factor (NIF) family protein (HF=2e-3)
Module size 7 genes
NF 0.26
%ile 22.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4352.80.90Zm.4.2.A1_atCA401225--2e-3At5g11860NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.5571.60.90Zm.5436.1.A1_atAI833498--3e+0At3g06470GNS1/SUR4 membrane family proteinO.I.H.G.S.X.
0.4455.70.90Zm.17590.1.A1_atCK144918hypothetical protein LOC100191237-3e-46At1g67280lactoylglutathione lyase, putative / glyoxalase I, putativeO.I.H.G.S.X.
0.4048.50.91Zm.1338.1.A1_atAY107813.1--6e+0At5g15350plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.1912.80.90Zm.5944.1.A1_atBG874229pyruvate kinase, cytosolic isozyme-2e-97At3g52990pyruvate kinase, putativeO.I.H.G.S.X.
0.147.70.90Zm.10062.1.A1_atBM378648hypothetical protein LOC100280233-4e-4At5g16000NIK1 (NSP-INTERACTING KINASE 1)O.I.H.G.S.X.
0.083.40.90Zm.12574.1.A1_atCD967092hypothetical protein LOC100277061-2e+0At4g33740unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.895.5GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
3.494.9GSM202304B73 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
3.394.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM202292B73 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
3.194.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM205370B73 13 DAP endosperm tissue biological replicate 2GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO
2.993.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM202295Mo17xB73 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
2.893.5GSM202302B73xMo17 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
2.893.5GSM202307B73xMo17 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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