Co-expression analysis

Gene ID Zm.3982.1.A1_at
Gene name 50S ribosomal protein L21
Homology with ArabidopsisSimilar to At1g35680: 50S ribosomal protein L21, chloroplast / CL21 (RPL21) (HF=2e-3)
Module size 6 genes
NF 0.42
%ile 48.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.95Zm.3982.1.A1_atAW14668450S ribosomal protein L21-2e-3At1g3568050S ribosomal protein L21, chloroplast / CL21 (RPL21)O.I.H.G.S.X.
0.6179.50.96Zm.343.1.S1_atCB603836outer cell layer2-6e-3At4g00730ANL2 (ANTHOCYANINLESS 2)O.I.H.G.S.X.
0.5065.70.96Zm.9675.1.A1_atBM335265chitinase 2-5e+0At1g62250unknown proteinO.I.H.G.S.X.
0.3029.80.97Zm.19066.1.S1_atCD975063--1e-37At2g02000GAD3 (glutamate decarboxylase 3)O.I.H.G.S.X.
0.2928.10.97Zm.7976.1.S1_atBM080696hypothetical protein LOC100217261-2e-46At5g37680ATARLA1A (ADP-ribosylation factor-like A1A)O.I.H.G.S.X.
0.2216.90.97Zm.15576.1.A1_a_atCK827910--3e-1At5g01860zinc finger (C2H2 type) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.098.7GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
12.598.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
10.698.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
4.296.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1613550_at, orthologous to the query gene, Zm.3982.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6384.31613550_atAt1g35680hypothetical protein LOC100255002-1e-1At5g19240unknown proteinO.I.H.G.S.X.
0.8494.81616667_a_atAt1g35680similar to ribosomal protein L29 family protein /// hypothetical protein LOC100259766-7e-5At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.7189.51620854_atAt1g35680hypothetical protein LOC100258321-7e-12At1g29070ribosomal protein L34 family proteinO.I.H.G.S.X.
0.6787.91621569_atAt1g35680hypothetical protein LOC100257626-4e-7At3g27850RPL12-C (ribosomal protein l12-c)O.I.H.G.S.X.
0.6484.71613405_atAt1g35680hypothetical protein LOC100250386-5e-28At3g62030peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)O.I.H.G.S.X.
0.6081.91616390_atAt1g35680hypothetical protein LOC100248042-1e-41At3g1312030S ribosomal protein S10, chloroplast, putativeO.I.H.G.S.X.
0.5779.81614138_atAt1g35680hypothetical protein LOC100254839-3e-14At1g68590plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeO.I.H.G.S.X.
0.5475.71622193_atAt1g35680hypothetical protein LOC100265325-2e-35At5g30510RPS1 (RIBOSOMAL PROTEIN S1)O.I.H.G.S.X.
0.5375.21606900_atAt1g35680hypothetical protein LOC100254016-4e-16At5g1432030S ribosomal protein S13, chloroplast (CS13)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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