Co-expression analysis

Gene ID Zm.3982.1.A1_at
Gene name 50S ribosomal protein L21
Homology with ArabidopsisSimilar to At1g35680: 50S ribosomal protein L21, chloroplast / CL21 (RPL21) (HF=2e-3)
Module size 6 genes
NF 0.42
%ile 48.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.95Zm.3982.1.A1_atAW14668450S ribosomal protein L21-2e-3At1g3568050S ribosomal protein L21, chloroplast / CL21 (RPL21)O.I.H.G.S.X.
0.6179.50.96Zm.343.1.S1_atCB603836outer cell layer2-6e-3At4g00730ANL2 (ANTHOCYANINLESS 2)O.I.H.G.S.X.
0.5065.70.96Zm.9675.1.A1_atBM335265chitinase 2-5e+0At1g62250unknown proteinO.I.H.G.S.X.
0.3029.80.97Zm.19066.1.S1_atCD975063--1e-37At2g02000GAD3 (glutamate decarboxylase 3)O.I.H.G.S.X.
0.2928.10.97Zm.7976.1.S1_atBM080696hypothetical protein LOC100217261-2e-46At5g37680ATARLA1A (ADP-ribosylation factor-like A1A)O.I.H.G.S.X.
0.2216.90.97Zm.15576.1.A1_a_atCK827910--3e-1At5g01860zinc finger (C2H2 type) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.098.7GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
12.598.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
10.698.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
4.296.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.249.290.S1_at, orthologous to the query gene, Zm.3982.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9699.8PtpAffx.249.290.S1_atAt1g35680hypothetical protein-7e-3At1g3568050S ribosomal protein L21, chloroplast / CL21 (RPL21)O.I.H.G.S.X.
0.7091.7Ptp.5284.1.S1_atAt1g35680hypothetical protein-2e+0At4g26701DNA binding / DNA topoisomerase type IO.I.H.G.S.X.
0.4369.7PtpAffx.210146.1.S1_atAt1g35680hypothetical protein-3e-5At5g44520ribose 5-phosphate isomerase-relatedO.I.H.G.S.X.
0.3255.2PtpAffx.154077.1.A1_atAt1g35680--9e-5At3g15520peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamaseO.I.H.G.S.X.
0.3255.2PtpAffx.140285.1.A1_s_atAt1g35680hypothetical protein-2e-10At1g48350ribosomal protein L18 family proteinO.I.H.G.S.X.
0.3052.0Ptp.5284.1.S1_s_atAt1g35680hypothetical protein-2e+0At4g26701DNA binding / DNA topoisomerase type IO.I.H.G.S.X.
0.2645.2Ptp.3375.1.S1_atAt1g35680hypothetical protein-7e-6At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)O.I.H.G.S.X.
0.2645.2PtpAffx.249.174.S1_a_atAt1g35680hypothetical protein-1e-4At1g3568050S ribosomal protein L21, chloroplast / CL21 (RPL21)O.I.H.G.S.X.
0.2340.5PtpAffx.26613.1.S1_atAt1g35680hypothetical protein-9e-52At4g18480CHLI1O.I.H.G.S.X.
0.2238.3PtpAffx.44982.1.S1_atAt1g35680hypothetical protein-3e-137At1g08520CHLDO.I.H.G.S.X.
0.2136.5PtpAffx.102795.1.A1_s_atAt1g35680hypothetical protein-3e-17At1g50900-O.I.H.G.S.X.
0.2034.6Ptp.993.1.S1_a_atAt1g35680hypothetical protein-6e-26At3g01480CYP38 (cyclophilin 38)O.I.H.G.S.X.
0.1729.1PtpAffx.249.144.A1_atAt1g35680hypothetical protein-8e-9At5g13510ribosomal protein L10 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage