Co-expression analysis

Gene ID	Zm.398.1.S1_at
Gene name	histone deacetylase HDA101 /// RPD3 histone deacetylase homolog
Homology with Arabidopsis	Similar to At4g38130: HD1 (HISTONE DEACETYLASE 1) (HF=1e-30)
Module size	10 genes
NF	0.19
%ile	14.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	0.95	Zm.398.1.S1_at	AF384032.1	histone deacetylase HDA101 /// RPD3 histone deacetylase homolog	-	1e-30	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.4812.1.S1_at	AY105116.1	Grx_S14 - glutaredoxin subgroup II /// Grx_S14 - glutaredoxin subgroup II	-	6e+0	At5g26220	ChaC-like family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.97	Zm.6200.2.S1_a_at	AI714601	Hypothetical protein LOC100191329	-	3e-3	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.97	Zm.5785.4.A1_at	CA403256	hypothetical protein LOC100279822	-	4e-117	At1g02500	SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.98	Zm.3186.1.S1_a_at	CK827152	hypothetical protein LOC100279311	-	4e-4	At5g16070	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.97	Zm.3134.2.S1_at	AI770607	aldehyde dehydrogenase 3B1	-	8e-1	At3g23000	CIPK7 (CBL-INTERACTING PROTEIN KINASE 7)	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.96	Zm.11872.1.A1_at	BM381418	metal ion binding protein	-	7e-2	At4g39700	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.97	Zm.16836.1.A1_at	CF629974	hypothetical protein LOC100193667	-	7e-2	At1g80400	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.96	Zm.12955.1.A1_at	CA402356	-	-	6e-1	At3g05741	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.96	Zm.15514.1.A1_at	CD437159	hypothetical protein LOC100216604	-	1e-15	At3g05545	transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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