Co-expression analysis

Gene ID	Zm.3961.1.S1_at
Gene name	hypothetical protein LOC100272531
Homology with Arabidopsis	Similar to At1g70290: ATTPS8 (HF=3e-7)
Module size	10 genes
NF	0.65
%ile	86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.54	69.8	0.97	Zm.3961.1.S1_at	CK370362	hypothetical protein LOC100272531	-	3e-7	At1g70290	ATTPS8	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.98	Zm.14428.1.S1_at	AY106109.1	cyclin-L2	-	4e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.16513.6.A1_at	AI834422	hypothetical protein LOC100191561	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.554.1.A1_at	CF630610	glutathione transferase28	-	1e-1	At1g17170	ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.97	Zm.10174.1.S1_at	AY111125.1	-	-	4e+0	At2g47370	-	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.97	Zm.534.1.A1_x_at	AF276086.1	protein kinase AKINbetagamma-2	-	3e-10	At1g09020	SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4)	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.97	Zm.6874.2.S1_a_at	CF637577	hypothetical protein LOC100193230	-	3e-3	At2g45430	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.98	Zm.18270.1.A1_at	CA399376	Hypothetical protein LOC100194036	-	3e-6	At4g37200	HCF164	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.11624.1.A1_at	CF637935	thioredoxin H-type	-	3e-1	At3g51030	ATTRX1	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.14125.1.A1_at	CO533246	hypothetical protein LOC100273725	-	3e-4	At3g51280	male sterility MS5, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.9	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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