Co-expression analysis

Gene ID	Zm.3907.1.S1_at
Gene name	AGAMOUS-like protein /// M2 protein
Homology with Arabidopsis	Similar to At4g18960: AG (AGAMOUS) (HF=3e-15)
Module size	10 genes
NF	0.39
%ile	42.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.84	Zm.3907.1.S1_at	L81162.2	AGAMOUS-like protein /// M2 protein	-	3e-15	At4g18960	AG (AGAMOUS)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.91	Zm.6629.1.S1_at	BQ034792	40S ribosomal protein S30	-	2e-24	At4g29390	40S ribosomal protein S30 (RPS30B)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.90	Zm.12569.1.S1_at	AI065621	-	-	1e-11	At3g46960	ATP binding / ATP-dependent helicase/ helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.90	Zm.385.1.A1_at	AF058763.1	Lesion22	-	1e-21	At2g40490	HEME2	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.91	Zm.2064.1.A1_at	CK144546	-	-	5e+0	At2g27580	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.90	Zm.6643.1.S1_at	BM080215	hypothetical protein LOC100278234	-	3e-2	At5g41440	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.90	Zm.9662.1.A1_at	CB351308	-	-	7e+0	At5g41910	RNA polymerase II mediator complex protein-related	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.90	Zm.13723.1.S1_at	CO527387	-	-	2e+0	At2g22201	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.92	Zm.6007.1.S1_at	AI666154	THUMP domain containing protein	-	3e+0	At5g54540	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.91	Zm.4397.1.S1_at	AI714503	hypothetical protein LOC100274308	-	2e+0	At5g62140	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.8	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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