Co-expression analysis

Gene ID	Zm.390.1.S1_at
Gene name	dwarf plant3
Homology with Arabidopsis	Similar to At4g39260: GR-RBP8 (HF=4e+0)
Module size	6 genes
NF	0.70
%ile	91.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.390.1.S1_at	U32579.1	dwarf plant3	-	4e+0	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.95	Zm.3892.8.S1_a_at	CA404367	Elongation factor 1 alpha	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.95	Zm.15524.1.A1_at	CF632238	-	-	4e-1	At5g46780	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.95	Zm.2901.1.A1_at	BM351614	hypothetical protein LOC100277716	-	2e+0	At5g58784	dehydrodolichyl diphosphate synthase	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.95	Zm.11783.1.A1_at	BM380733	hypothetical protein LOC100191487	-	4e+0	At5g42510	disease resistance-responsive family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.95	Zm.2784.1.A1_at	CF629950	hypothetical protein LOC100276915	-	5e-8	At5g17420	IRX3 (IRREGULAR XYLEM 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.6	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.4	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM162265	Wild type 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.3	96.1	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.3	96.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.0	95.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C21000035_at, orthologous to the query gene, Zm.390.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.6	PsAffx.C21000035_at	At4g39260	-	-	9e-1	At1g15840	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	PsAffx.C50000062_at	At4g39260	-	-	1e+0	At3g10300	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.59	79.5	PsAffx.psHB014xA17f_s_at	At4g39260	-	-	8e-2	At5g23210	SCPL34	O.I.	H.G.	S.X.	Please select
0.56	78.2	PsAffx.C162000015_at	At4g39260	-	-	1e+0	At2g28671	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	PsAffx.psHB014xG05f_s_at	At4g39260	-	-	5e+0	At1g47780	acyl-protein thioesterase-related	O.I.	H.G.	S.X.	Please select
0.54	74.8	PsAffx.C7000122_at	At4g39260	-	-	5e+0	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	O.I.	H.G.	S.X.	Please select
0.52	73.1	PsAffx.C29000074_at	At4g39260	-	-	5e+0	At5g35475	-	O.I.	H.G.	S.X.	Please select
0.51	72.3	PsAffx.C50000067_at	At4g39260	-	-	2e+1	At5g44568	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	PsAffx.psMC003xP07f_at	At4g39260	-	-	9e+0	At4g28440	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.49	68.3	PsAffx.C105000053_at	At4g39260	-	-	2e+0	At1g10430	PP2A-2	O.I.	H.G.	S.X.	Please select
0.49	68.3	PsAffx.CL730Contig1_at	At4g39260	-	-	4e+0	At5g37260	RVE2 (REVEILLE 2)	O.I.	H.G.	S.X.	Please select
0.48	67.7	PsAffx.C35000063_at	At4g39260	-	-	4e+0	At5g41765	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	PsAffx.CL653Contig1_at	At4g39260	-	-	6e-1	At2g04925	-	O.I.	H.G.	S.X.	Please select
0.47	66.6	PsAffx.psMA012xJ18f_at	At4g39260	-	-	5e-1	At4g39070	zinc finger (B-box type) family protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	PsAffx.CL728Contig1_at	At4g39260	-	-	1e+0	At1g23205	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	PsAffx.C71000010_at	At4g39260	-	-	3e-1	At1g14600	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.45	63.9	PsAffx.psHB020xH07f_at	At4g39260	-	-	9e+0	At4g29590	methyltransferase	O.I.	H.G.	S.X.	Please select
0.43	60.6	PsAffx.C55000025_s_at	At4g39260	-	-	5e-1	At3g10400	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	PsAffx.C144000026_at	At4g39260	-	-	1e-1	At5g64400	-	O.I.	H.G.	S.X.	Please select
0.41	58.1	PsAffx.CL869Contig1_at	At4g39260	-	-	2e+0	At3g06145	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.80926.1.S1_s_at	At4g39260	-	-	1e+1	At3g02310	SEP2 (SEPALLATA 2)	O.I.	H.G.	S.X.	Please select
0.38	53.3	PsAffx.C277000003_s_at	At4g39260	-	-	8e-2	At3g15060	AtRABA1g (Arabidopsis Rab GTPase homolog A1g)	O.I.	H.G.	S.X.	Please select
0.37	51.7	PsAffx.CL2381Contig1_at	At4g39260	-	-	3e+0	At3g13882	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.36	50.8	PsAffx.CL1416Contig1_at	At4g39260	-	-	1e-8	At2g34250	protein transport protein sec61, putative	O.I.	H.G.	S.X.	Please select
0.32	43.7	PsAffx.C26000021_at	At4g39260	-	-	2e+0	At1g67860	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	PsAffx.C173000014_at	At4g39260	-	-	3e-1	At2g45800	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	PsAffx.C190000012_at	At4g39260	-	-	7e+0	At4g14740	phosphoinositide binding	O.I.	H.G.	S.X.	Please select
0.26	33.9	PsAffx.psZG004xK03f_s_at	At4g39260	-	-	7e-4	At1g77710	-	O.I.	H.G.	S.X.	Please select
0.24	30.9	PsAffx.CL2090Contig1_at	At4g39260	-	-	1e+0	At3g24070	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	PsAffx.CL668Contig1_at	At4g39260	-	-	3e-1	At5g47630	mtACP3 (mitochondrial acyl carrier protein 3)	O.I.	H.G.	S.X.	Please select
0.23	29.9	PsAffx.C65000078_at	At4g39260	-	-	1e+0	At1g64400	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	O.I.	H.G.	S.X.	Please select
0.22	28.1	PsAffx.C953000002_s_at	At4g39260	-	-	3e-1	At3g22120	CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN)	O.I.	H.G.	S.X.	Please select
0.21	26.6	PsAffx.CL2361Contig1_s_at	At4g39260	-	-	4e+0	At3g53740	60S ribosomal protein L36 (RPL36B)	O.I.	H.G.	S.X.	Please select
0.17	21.2	PsAffx.psZS006xJ15f_at	At4g39260	-	-	2e+0	At5g22440	60S ribosomal protein L10A (RPL10aC)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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