Co-expression analysis

Gene ID Zm.39.1.S1_at
Gene name Calcium-dependent protein kinase
Homology with ArabidopsisSimilar to At4g35310: CPK5 (calmodulin-domain protein kinase 5) (HF=1e-25)
Module size 18 genes
NF 0.32
%ile 30.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.98Zm.39.1.S1_atD87042.1Calcium-dependent protein kinase-1e-25At4g35310CPK5 (calmodulin-domain protein kinase 5)O.I.H.G.S.X.
0.5571.60.99Zm.18127.1.S1_atCN845217membrin 11-1e-8At5g50440MEMB12 (MEMBRIN 12)O.I.H.G.S.X.
0.4759.90.99ZmAffx.894.1.A1_atAI770873--8e-1At5g6230040S ribosomal protein S20 (RPS20C)O.I.H.G.S.X.
0.4658.40.99ZmAffx.587.1.A1_atAI715015--3e+0At5g35900LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)O.I.H.G.S.X.
0.4251.30.99ZmAffx.812.1.A1_atAI770420--8e-4At1g49730protein kinase family proteinO.I.H.G.S.X.
0.4048.50.99Zm.12306.1.S1_atCO517988hypothetical protein LOC100216558-5e-2At5g19680leucine-rich repeat family proteinO.I.H.G.S.X.
0.3945.60.99ZmAffx.237.1.A1_atAI670249--1e+1At5g62480ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)O.I.H.G.S.X.
0.3641.30.98Zm.16824.1.S1_atCF602732SAM domain family protein-5e-1At3g07170sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.3233.40.99Zm.3180.1.A1_atAW179477--7e-1At1g32700zinc-binding family proteinO.I.H.G.S.X.
0.3029.80.99Zm.8586.1.A1_atBM338441--1e+0At3g13227serine-rich protein-relatedO.I.H.G.S.X.
0.3029.80.99Zm.6121.1.S1_atCD439726--4e-1At5g54540-O.I.H.G.S.X.
0.2724.60.99Zm.6284.1.S1_atAI691250hypothetical protein LOC100194329-1e+0At5g22035-O.I.H.G.S.X.
0.2521.30.99Zm.6195.1.A1_x_atAI668513hypothetical protein LOC100275106-4e+0At4g17790-O.I.H.G.S.X.
0.2216.90.99ZmAffx.1194.1.A1_atBE025369--4e+0At5g59990-O.I.H.G.S.X.
0.2014.20.99ZmAffx.754.1.S1_atAI745921--2e-1At1g33960AIG1 (AVRRPT2-INDUCED GENE 1)O.I.H.G.S.X.
0.1710.60.99Zm.17283.1.A1_atCK368046hypothetical protein LOC100194129-1e-1At3g51960bZIP family transcription factorO.I.H.G.S.X.
0.1710.60.99Zm.6399.1.A1_atCF630978hypothetical protein LOC100277208-9e-2At2g38646unknown proteinO.I.H.G.S.X.
0.169.40.99Zm.6207.3.A1_x_atCA40331860S ribosomal protein L15-3e-26At4g1739060S ribosomal protein L15 (RPL15B)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.598.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM290556CCR mutant M2 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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