Co-expression analysis

Gene ID	Zm.3889.1.A1_at
Gene name	Triosephosphate isomerase, cytosolic
Homology with Arabidopsis	Similar to At3g55440: TPI (TRIOSEPHOSPHATE ISOMERASE) (HF=1e-24)
Module size	6 genes
NF	0.73
%ile	94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	Zm.3889.1.A1_at	CK371158	Triosephosphate isomerase, cytosolic	-	1e-24	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.98	Zm.9790.1.A1_at	CO523101	hypothetical protein LOC100192495	-	1e+0	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	ZmAffx.1003.1.S1_at	AI881345	peptide chain release factor 2	-	3e+0	At1g11850	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.98	ZmAffx.1199.1.A1_at	BE057023	-	-	5e-2	At3g48610	phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.99			-	-				O.I.	H.G.	S.X.	Please select
0.53	69.1	0.99	Zm.8149.2.A1_at	BM072723	-	-	6e+0	At4g14640	CAM8 (CALMODULIN 8)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	96.7	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.9	96.7	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.2	96.0	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.9	95.7	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.7	95.4	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.3	94.7	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.2	94.5	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.0	94.0	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.0	94.0	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.0	94.0	GSM202316	Mo17xB73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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