Co-expression analysis

Gene ID	Zm.3885.1.S1_at
Gene name	Pectin methylesterase1
Homology with Arabidopsis	Similar to At3g06830: pectinesterase family protein (HF=6e-2)
Module size	6 genes
NF	0.47
%ile	57.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.97	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.6975.1.S1_at	AW066660	hypothetical protein LOC100272316	-	4e-40	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.4560.2.S1_at	AY106577.1	-	-	2e-11	At3g59350	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.13815.1.S1_at	CF057002	Grx_C2.2 - glutaredoxin subgroup I	-	7e-3	At5g63030	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.14149.1.A1_at	AY111524.1	-	-	1e+0	At5g55135	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.8378.1.A1_at	BM073885	hypothetical protein LOC100273227	-	6e+0	At3g26860	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.9	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.5588.1.A1_at, orthologous to the query gene, Zm.3885.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.3	Ta.5588.1.A1_at	At3g06830	-	-	9e-3	At3g06830	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.80	92.2	Ta.28801.1.A1_a_at	At3g06830	-	-	7e-3	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.	Please select
0.77	90.8	Ta.3931.1.S1_at	At3g06830	-	-	6e-1	At3g12510	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	89.4	TaAffx.4449.1.S1_at	At3g06830	-	-	9e+0	At4g38370	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.4081.1.S1_at	At3g06830	-	-	6e-16	At3g61230	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.64	83.6	TaAffx.59876.1.S1_at	At3g06830	-	-	3e-1	At2g41905	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	83.1	Ta.15997.1.S1_at	At3g06830	-	-	3e-4	At1g51650	ATP synthase epsilon chain, mitochondrial	O.I.	H.G.	S.X.	Please select
0.63	83.1	TaAffx.92758.1.S1_at	At3g06830	Endo-beta-1,3-glucanase	-	7e-1	At2g35210	RPA (ROOT AND POLLEN ARFGAP)	O.I.	H.G.	S.X.	Please select
0.63	83.1	Ta.3816.1.S1_x_at	At3g06830	-	-	5e+0	At3g11150	unknown protein	O.I.	H.G.	S.X.	Please select
0.62	82.3	Ta.3767.2.S1_x_at	At3g06830	-	-	2e-1	At2g43870	polygalacturonase, putative / pectinase, putative	O.I.	H.G.	S.X.	Please select
0.58	79.2	Ta.11324.1.A1_at	At3g06830	-	-	5e-1	At4g00231	MEE50 (maternal effect embryo arrest 50)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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