Co-expression analysis

Gene ID	Zm.3885.1.S1_at
Gene name	Pectin methylesterase1
Homology with Arabidopsis	Similar to At3g06830: pectinesterase family protein (HF=6e-2)
Module size	6 genes
NF	0.47
%ile	57.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.97	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.6975.1.S1_at	AW066660	hypothetical protein LOC100272316	-	4e-40	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.4560.2.S1_at	AY106577.1	-	-	2e-11	At3g59350	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.13815.1.S1_at	CF057002	Grx_C2.2 - glutaredoxin subgroup I	-	7e-3	At5g63030	glutaredoxin, putative	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.14149.1.A1_at	AY111524.1	-	-	1e+0	At5g55135	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.8378.1.A1_at	BM073885	hypothetical protein LOC100273227	-	6e+0	At3g26860	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.9	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.71146.1.S1_at, orthologous to the query gene, Zm.3885.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.71146.1.S1_at	At3g06830	-	-	8e-2	At2g47040	VGD1 (VANGUARD1)	O.I.	H.G.	S.X.	Please select
0.77	90.3	Gma.825.1.A1_at	At3g06830	-	-	1e+0	At3g06740	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	GmaAffx.63015.1.S1_at	At3g06830	-	-	2e+0	At2g47970	NPL4 family protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.78268.1.S1_at	At3g06830	-	-	8e-5	At3g01270	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.26070.1.S1_at	At3g06830	-	-	1e+0	At3g01980	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	GmaAffx.57996.1.S1_at	At3g06830	-	-	3e+0	At4g14305	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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