Co-expression analysis

Gene ID Zm.3884.1.A1_at
Gene name alpha-expansin 9
Homology with ArabidopsisSimilar to At1g04778: unknown protein (HF=1e-1)
Module size 7 genes
NF 0.67
%ile 89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.84Zm.3884.1.A1_atBQ486479alpha-expansin 9-1e-1At1g04778unknown proteinO.I.H.G.S.X.
0.7792.10.85Zm.17683.1.S1_atCK370020--3e-1At1g58170disease resistance-responsive protein-related / dirigent protein-relatedO.I.H.G.S.X.
0.7188.20.84Zm.17100.1.S1_a_atCF972476hypothetical protein LOC100217230-2e-6At5g64550loricrin-relatedO.I.H.G.S.X.
0.6785.80.85Zm.17682.1.S1_atCK369994--9e-1At1g07950surfeit locus protein 5 family protein / SURF5 family proteinO.I.H.G.S.X.
0.6381.10.81Zm.11932.1.A1_atBM381964--6e-1At5g27690heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.6077.80.89Zm.7650.1.A1_atBM079330hypothetical protein LOC100191988-5e+0At2g03931-O.I.H.G.S.X.
0.4658.40.87Zm.16447.1.S1_atCF348931--1e+0At5g16580BGLU2 (BETA GLUCOSIDASE 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.999.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.799.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.898.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os12g0546800, orthologous to the query gene, Zm.3884.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.2Os12g0546800At1g04778-Alpha-expansin OsEXPA262e+0At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)O.I.H.G.S.X.
0.6787.2Os05g0480700At1g04778-Vacuolar ATP synthase subunit E (EC 3.6.3.14)(V-ATPase E subunit) (Vacuolar proton pump E subunit)2e-6At4g11150TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)O.I.H.G.S.X.
0.6787.2Os11g0689300At1g04778-Calmodulin-binding protein MPCBP2e-2At2g43040NPG1 (no pollen germination 1)O.I.H.G.S.X.
0.6787.2Os06g0181500At1g04778-Plasma membrane H+-ATPase (EC 3.6.1.3)2e-6At1g80660AHA9O.I.H.G.S.X.
0.6787.2Os01g0675000At1g04778-Protein of unknown function DUF315 domaincontaining protein7e-2At3g24620ROPGEF8O.I.H.G.S.X.
0.6382.7Os07g0102500At1g04778-Lupus La protein family protein1e-5At3g19090RNA-binding protein, putativeO.I.H.G.S.X.
0.6181.2Os06g0679400At1g04778-Myb, DNA-binding domain containing protein4e-6At4g26930MYB97 (myb domain protein 97)O.I.H.G.S.X.
0.5068.0Os06g0662700At1g04778-Pollen allergen Lol p2 family protein3e-1At5g35960protein kinase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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