Co-expression analysis

Gene ID Zm.3875.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g50200: ALATS (ALANYL-TRNA SYNTHETASE) (HF=2e-31)
Module size 6 genes
NF 0.53
%ile 69.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.97Zm.3875.1.S1_atBQ539306--2e-31At1g50200ALATS (ALANYL-TRNA SYNTHETASE)O.I.H.G.S.X.
0.6077.80.98Zm.2770.1.A1_atBM380104hypothetical protein LOC100192561-1e+0At2g17860pathogenesis-related thaumatin family proteinO.I.H.G.S.X.
0.5369.10.97Zm.3161.1.S1_atAY108575.1hypothetical protein LOC100273395-3e-6At2g35190NPSN11 (NOVEL PLANT SNARE 11)O.I.H.G.S.X.
0.4455.70.98Zm.8732.1.A1_atBM347474esterase-3e+0At5g53030unknown proteinO.I.H.G.S.X.
0.3844.20.97Zm.10141.1.A1_atAY108995.1esterase-2e+0At4g386901-phosphatidylinositol phosphodiesterase-relatedO.I.H.G.S.X.
0.3538.90.97Zm.7765.1.A1_atBQ539662--3e-1At1g53170ERF8O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7389.90.97Zm.2267.2.S1_atAW330896hypothetical protein LOC100216854-6e+0At4g14740phosphoinositide bindingO.I.H.G.S.X.
0.6785.80.96Zm.17537.1.S1_atBM347272--9e-1At5g04120phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.6785.80.97Zm.898.1.A1_a_atBM337541--1e+0At3g02730TRXF1 (THIOREDOXIN F-TYPE 1)O.I.H.G.S.X.
0.6077.80.98Zm.19215.2.S1_atBG321066--2e-12At1g30480DRT111O.I.H.G.S.X.
0.5775.10.96Zm.18348.1.A1_s_atCO531270hypothetical protein LOC100191661-5e+0At3g03820auxin-responsive protein, putativeO.I.H.G.S.X.
0.5571.60.96Zm.19201.2.A1_atCO526388Hypothetical protein LOC100216991-2e+0At5g39650unknown proteinO.I.H.G.S.X.
0.5065.70.96Zm.11928.1.A1_s_atBM381937glyoxalase family protein superfamily-1e+1At1g62978unknown proteinO.I.H.G.S.X.
0.5065.70.96Zm.2300.1.A1_atAY108971.1--2e-1At2g04550IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5)O.I.H.G.S.X.
0.4861.30.94Zm.10261.1.S1_atAY112633.1--1e-17At3g47460ATSMC2O.I.H.G.S.X.
0.4658.40.95Zm.12256.1.S1_atBU0490422-hydroxy-3-oxopropionate reductase-3e-9At3g25530GLYR1 (GLYOXYLATE REDUCTASE 1)O.I.H.G.S.X.
0.4658.40.96Zm.4338.3.S1_atAW000126--3e+0At5g27170unknown proteinO.I.H.G.S.X.
0.4658.40.96Zm.12510.1.S1_atAW056992--5e+0At1g76955Expressed proteinO.I.H.G.S.X.
0.4455.70.96Zm.13484.1.S1_atAY108906.1--3e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.4455.70.98Zm.7899.1.A1_atBM080344hypothetical protein LOC100193249-1e+0At1g65820microsomal glutathione s-transferase, putativeO.I.H.G.S.X.
0.4352.80.96Zm.3768.1.A1_atAI622178hypothetical protein LOC100193043-2e+0At1g74140-O.I.H.G.S.X.
0.4251.30.94Zm.604.1.A1_atAF326490.1plasma membrane integral protein ZmPIP1-6-1e-5At1g01620PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C)O.I.H.G.S.X.
0.4048.50.95Zm.17859.1.A1_atCK787045peptidase S8 and S53, subtilisin, kexin, sedolisin-4e+0At3g07350unknown proteinO.I.H.G.S.X.
0.4048.50.96Zm.5571.1.A1_atAY111074.1hypothetical protein LOC100194279-2e-1At3g04100AGL57O.I.H.G.S.X.
0.4048.50.97Zm.3077.2.S1_x_atCF061929calmodulin-4e-97At3g43810CAM7 (CALMODULIN 7)O.I.H.G.S.X.
0.4048.50.97Zm.5070.1.S1_atAY108736.1Hypothetical protein LOC100193023-2e-16At1g22950iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsO.I.H.G.S.X.
0.4048.50.98Zm.5464.1.A1_atAI622048hypothetical protein LOC100272690-2e+0At1g62790protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.3641.30.97Zm.80.1.A1_atCD972407beta-amylase-6e-2At2g32290BAM6 (BETA-AMYLASE 6)O.I.H.G.S.X.
0.3538.90.96Zm.6648.1.S1_atAY108962.1hypothetical protein LOC100272455-7e+0At5g64900PROPEP1O.I.H.G.S.X.
0.3437.20.88Zm.11777.1.A1_atBM380650--4e+0At3g61840unknown proteinO.I.H.G.S.X.
0.3336.00.96Zm.12248.1.S1_atBM338038Hypothetical protein LOC100216999-4e+0At3g59870unknown proteinO.I.H.G.S.X.
0.3336.00.96Zm.4242.1.S1_atCD990106--9e-2At3g57240BG3 (BETA-1,3-GLUCANASE 3)O.I.H.G.S.X.
0.3233.40.95Zm.13376.1.S1_s_atX85805.1plasma-membrane H+ATPase2 /// proton-exporting ATPase-2e-95At4g30190AHA2O.I.H.G.S.X.
0.3233.40.96Zm.15172.1.A1_atCF649742--3e+0At4g03965protein binding / zinc ion bindingO.I.H.G.S.X.
0.3131.60.93Zm.4350.1.A1_atAW091239--1e+0At5g49334unknown proteinO.I.H.G.S.X.
0.3131.60.94Zm.5771.1.A1_atBM336016tobamovirus multiplication 3-5e-25At1g14530THH1 (TOM THREE HOMOLOG 1)O.I.H.G.S.X.
0.3131.60.79Zm.3009.1.S1_atAI967193--6e+0Atmg00940-O.I.H.G.S.X.
0.3131.60.82ZmAffx.625.1.S1_atAI715053--1e+1At5g13340unknown proteinO.I.H.G.S.X.
0.3131.60.87Zm.14906.1.A1_s_atBM380952--6e+0At5g59105-O.I.H.G.S.X.
0.3131.60.96Zm.18994.2.S1_atAI673994--1e+1At5g03495nucleotide bindingO.I.H.G.S.X.
0.3029.80.96Zm.3540.1.A1_atAW056006--1e+1At5g642502-nitropropane dioxygenase family / NPD familyO.I.H.G.S.X.
0.2928.10.96Zm.1402.1.S1_atBF729248--4e+0At1g29040unknown proteinO.I.H.G.S.X.
0.2928.10.97Zm.5860.4.A1_a_atAI759079mitochondrial-processing peptidase beta subunit-3e+0At4g19910Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.2928.10.97Zm.5860.4.S1_atAI759079--3e+0At4g19910Toll-Interleukin-Resistance (TIR) domain-containing proteinO.I.H.G.S.X.
0.2724.60.94Zm.308.1.S1_atAF082347.1C13 endopeptidase NP1 precursor-3e-16At4g32940GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)O.I.H.G.S.X.
0.2724.60.98Zm.9356.2.A1_a_atCF626812--1e-6At1g74260PUR4 (purine biosynthesis 4)O.I.H.G.S.X.
0.2622.70.88Zm.11372.1.A1_atBM350048--1e+0At1g14160integral membrane family proteinO.I.H.G.S.X.
0.2521.30.88Zm.10833.1.S1_atAY109775.1--5e+0At5g64140RPS28 (RIBOSOMAL PROTEIN S28)O.I.H.G.S.X.
0.2521.30.95Zm.5776.1.A1_atCO520963hypothetical protein LOC100273913-9e-2At2g47140short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.598.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.196.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM385709Deep-sowing 10d treatment TIBA, biological rep1GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage