Co-expression analysis

Gene ID	Zm.3875.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g50200: ALATS (ALANYL-TRNA SYNTHETASE) (HF=2e-31)
Module size	6 genes
NF	0.53
%ile	69.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.3875.1.S1_at	BQ539306	-	-	2e-31	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.2770.1.A1_at	BM380104	hypothetical protein LOC100192561	-	1e+0	At2g17860	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.3161.1.S1_at	AY108575.1	hypothetical protein LOC100273395	-	3e-6	At2g35190	NPSN11 (NOVEL PLANT SNARE 11)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.8732.1.A1_at	BM347474	esterase	-	3e+0	At5g53030	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.10141.1.A1_at	AY108995.1	esterase	-	2e+0	At4g38690	1-phosphatidylinositol phosphodiesterase-related	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.7765.1.A1_at	BQ539662	-	-	3e-1	At1g53170	ERF8	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

A co-expression module including the grape gene, 1619142_at, orthologous to the query gene, Zm.3875.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1619142_at	At1g50200	-	-	2e+0	At4g36800	RCE1 (RUB1 CONJUGATING ENZYME 1)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1622210_at	At1g50200	hypothetical protein LOC100264072	-	3e-1	At2g19310	-	O.I.	H.G.	S.X.	Please select
0.06	6.8	1609556_at	At1g50200	hypothetical protein LOC100254625	-	2e-9	At5g55850	NOI	O.I.	H.G.	S.X.	Please select
0.06	6.8	1617524_a_at	At1g50200	hypothetical protein LOC100259825	-	3e-21	At1g65270	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.0	1613894_at	At1g50200	hypothetical protein LOC100260878	-	5e-7	At2g13690	PRLI-interacting factor, putative	O.I.	H.G.	S.X.	Please select
0.01	2.1	1610714_a_at	At1g50200	hypothetical protein LOC100261826	-	2e-5	At2g05840	PAA2 (20S PROTEASOME SUBUNIT PAA2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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