Co-expression analysis

Gene ID	Zm.3875.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g50200: ALATS (ALANYL-TRNA SYNTHETASE) (HF=2e-31)
Module size	6 genes
NF	0.53
%ile	69.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.3875.1.S1_at	BQ539306	-	-	2e-31	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.2770.1.A1_at	BM380104	hypothetical protein LOC100192561	-	1e+0	At2g17860	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.3161.1.S1_at	AY108575.1	hypothetical protein LOC100273395	-	3e-6	At2g35190	NPSN11 (NOVEL PLANT SNARE 11)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.8732.1.A1_at	BM347474	esterase	-	3e+0	At5g53030	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.10141.1.A1_at	AY108995.1	esterase	-	2e+0	At4g38690	1-phosphatidylinositol phosphodiesterase-related	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.7765.1.A1_at	BQ539662	-	-	3e-1	At1g53170	ERF8	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

A co-expression module including the barley gene, Contig3738_at, orthologous to the query gene, Zm.3875.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.4	Contig3738_at	At1g50200	-	-	3e-20	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig14472_at	At1g50200	-	-	4e-8	At1g28440	HSL1 (HAESA-Like 1)	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig8945_at	At1g50200	-	-	7e-1	At4g11250	AGL52	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig4650_s_at	At1g50200	-	-	5e-9	At5g36940	CAT3 (CATIONIC AMINO ACID TRANSPORTER 3)	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig725_s_at	At1g50200	-	-	1e-15	At1g21750	ATPDIL1-1 (PDI-LIKE 1-1)	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig15156_at	At1g50200	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig373_at	At1g50200	-	-	7e-52	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig9798_at	At1g50200	-	-	7e-1	At5g59150	ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D)	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig9136_at	At1g50200	-	-	1e-5	At3g51140	-	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig5117_at	At1g50200	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig14182_at	At1g50200	-	-	2e+0	At3g05170	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig624_at	At1g50200	-	-	3e-3	At2g31390	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig4175_at	At1g50200	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig125_at	At1g50200	-	-	2e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig11464_at	At1g50200	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig871_s_at	At1g50200	-	-	1e+0	At4g37530	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig3633_s_at	At1g50200	-	-	7e-1	At3g13480	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig13413_at	At1g50200	-	-	1e+0	At3g46210	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig13467_at	At1g50200	-	-	5e-10	At1g77180	chromatin protein family	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig6995_at	At1g50200	-	-	2e-8	At5g57270	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig12398_at	At1g50200	-	-	2e-1	At2g31240	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig13131_at	At1g50200	-	-	6e-1	At5g15610	proteasome family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig11977_at	At1g50200	-	-	6e-1	At5g62490	ATHVA22B	O.I.	H.G.	S.X.	Please select
0.30	37.0	HVSMEg0017A08r2_at	At1g50200	-	-	1e+0	At1g06510	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig5226_at	At1g50200	-	-	1e-1	At1g79790	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig4290_at	At1g50200	-	-	4e-15	At4g32390	phosphate translocator-related	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig5297_at	At1g50200	-	-	4e-16	At1g64550	ATGCN3	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig6581_at	At1g50200	-	-	6e-2	At3g26330	CYP71B37	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig14607_at	At1g50200	-	-	2e+0	At4g37440	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig11259_at	At1g50200	-	-	8e-4	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig9821_at	At1g50200	UDP-D-xylose epimerase 3	-	6e-3	At2g34850	MEE25 (maternal effect embryo arrest 25)	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig9013_at	At1g50200	-	-	4e-20	At1g80230	cytochrome c oxidase family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	HVSMEc0012C14r2_at	At1g50200	-	-	3e-1	At5g46920	intron maturase, type II family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig20400_at	At1g50200	-	-	5e+0	At5g10410	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig15983_at	At1g50200	-	-	2e+0	At5g49010	SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)	O.I.	H.G.	S.X.	Please select
0.23	26.1	Contig3421_at	At1g50200	-	-	7e-69	At2g23080	casein kinase II alpha chain, putative	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig13042_at	At1g50200	-	-	3e-1	At1g60350	anac024 (Arabidopsis NAC domain containing protein 24)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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