Co-expression analysis

Gene ID	Zm.3859.1.A1_at
Gene name	ubiquitin-conjugating enzyme E2-17 kDa
Homology with Arabidopsis	Similar to At2g02760: ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) (HF=4e-57)
Module size	6 genes
NF	0.64
%ile	85.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	1.00	Zm.3859.1.A1_at	BM335999	ubiquitin-conjugating enzyme E2-17 kDa	-	4e-57	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	O.I.	H.G.	S.X.	Please select
0.73	89.9	1.00	Zm.10487.1.S1_at	CF009695	desiccation-associated protein	-	1e-1	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.61	79.5	1.00	ZmAffx.543.1.S1_at	AI712085	-	-	3e+0	At4g03510	RMA1	O.I.	H.G.	S.X.	Please select
0.55	71.6	1.00	ZmAffx.592.1.A1_at	AI715020	-	-	1e+1	At3g12300	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	Zm.4814.3.A1_at	CD440511	elongation factor 1-beta	-	2e-10	At1g30230	elongation factor 1-beta / EF-1-beta	O.I.	H.G.	S.X.	Please select
0.47	59.9	1.00	ZmAffx.1183.1.A1_at	AW927833	-	-	1e+0	At1g19920	APS2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.2	91.3	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.2	91.3	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.1	90.8	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.0	90.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.8	88.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.8	88.9	GSM290556	CCR mutant M2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
1.7	88.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.7	88.2	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
1.6	87.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.5	86.4	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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