Co-expression analysis

Gene ID	Zm.3841.1.A1_at
Gene name	SKP1-like protein 1A
Homology with Arabidopsis	Similar to At1g75950: SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) (HF=3e-3)
Module size	13 genes
NF	0.18
%ile	12.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.8	0.97	Zm.3841.1.A1_at	AW057015	SKP1-like protein 1A	-	3e-3	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	Zm.13938.1.A1_at	CB350917	-	-	4e-117	At1g50250	FTSH1 (FtsH protease 1)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.5887.1.S1_at	AI664885	hypothetical protein LOC100193921	-	4e-1	At3g48590	NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.99	Zm.14784.1.A1_at	BG841481	-	-	3e+0	At3g01175	-	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.99	ZmAffx.734.1.A1_at	AI740044	-	-	1e+1	At5g01670	aldose reductase, putative	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.99	Zm.13738.1.A1_at	CA398635	hypothetical protein LOC100273462	-	1e-1	At5g25080	-	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.99	Zm.4452.1.A1_at	AI691174	-	-	4e+0	At3g57740	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.99	Zm.13162.1.A1_at	CO521967	-	-	9e-3	At3g02040	SRG3 (senescence-related gene 3)	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.99	Zm.14074.1.A1_at	AY104605.1	-	-	2e-11	At1g07110	F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.99	Zm.155.1.A1_a_at	AI667827	brittle endosperm1	-	4e-3	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.99	ZmAffx.796.1.S1_at	AI770343	-	-	3e+0	At5g47600	heat shock protein-related	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.99	Zm.13054.1.A1_at	CA403903	hypothetical protein LOC100273794	-	9e-6	At2g43080	AT-P4H-1 (A. THALIANA P4H ISOFORM 1)	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.98	Zm.7954.1.A1_at	BM080605	-	-	4e+0	At2g37240	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.8	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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