Co-expression analysis

Gene ID	Zm.3821.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g27950: CRF4 (CYTOKININ RESPONSE FACTOR 4) (HF=1e+0)
Module size	6 genes
NF	0.74
%ile	94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	75.1	0.96	Zm.3821.1.A1_at	CF635078	-	-	1e+0	At4g27950	CRF4 (CYTOKININ RESPONSE FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.96	Zm.6421.1.A1_at	AI834083	-	-	1e-9	At2g46380	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.96	Zm.12718.2.A1_at	AY106773.1	SET domain protein 113	-	6e+0	At5g53742	-	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.96	Zm.3911.1.A1_at	CA401442	-	-	7e-25	At3g45040	phosphatidate cytidylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.95	Zm.16931.1.A1_s_at	AI714400	hypothetical protein LOC100279421	-	3e-1	At5g46610	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.16352.1.A1_at	AY108001.1	-	-	1e+0	At2g32340	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.9	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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