Co-expression analysis

Gene ID	Zm.3806.1.S1_at
Gene name	hypothetical protein LOC100280019
Homology with Arabidopsis	Similar to At3g17060: pectinesterase family protein (HF=4e-2)
Module size	18 genes
NF	0.48
%ile	59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.2	0.84	Zm.3806.1.S1_at	CF009077	hypothetical protein LOC100280019	-	4e-2	At3g17060	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.86	Zm.5048.7.A1_x_at	AI622162	-	-	3e-11	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.94	Zm.14873.1.A1_x_at	BM337239	-	-	1e+0	At4g05620	F-box family protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.94	Zm.5346.1.S1_at	AY110712.1	-	-	1e-3	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.95	Zm.3509.1.A1_at	AI978044	-	-	1e+0	At4g00850	GIF3 (GRF1-INTERACTING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.94	Zm.2099.2.S1_at	AI691647	protein phosphatase 2A regulatory subunit A	-	1e-145	At1g13320	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.94	Zm.11865.1.A1_at	BM381345	hypothetical protein LOC100279047	-	3e-1	At2g39270	adenylate kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.3508.1.S1_at	BQ619526	SC3 protein	-	3e-11	At2g20840	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.87	Zm.3770.1.S1_a_at	AW225042	hypothetical protein LOC100278844	-	1e-43	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.92	Zm.505.2.A1_a_at	AI665681	Glucose translocator1	-	8e-1	Atcg00800	-	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.93	Zm.648.1.S1_at	AF144079.1	S-adenosyl-L-methionine:L-methionine S-methyltransferase	-	6e-19	At5g49810	MMT	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.94	Zm.4583.1.A1_at	AI737217	hypothetical protein LOC100280399	-	1e-6	At5g37780	CAM1 (CALMODULIN 1)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.94	Zm.14497.3.A1_at	CF012535	hypothetical protein LOC100274083	-	2e-15	At5g22880	HTB2	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.11635.1.A1_x_at	BM379470	-	-	4e+0	At5g19630	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.95	Zm.9123.1.A1_at	BM347577	hypothetical protein LOC100275105	-	1e+0	At5g39620	AtRABG1 (Arabidopsis Rab GTPase homolog G1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.94	Zm.2446.1.A1_at	AW216171	-	-	1e+0	At4g02580	NADH-ubiquinone oxidoreductase 24 kDa subunit, putative	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.93	Zm.3554.2.S1_at	AW600585	Zea m 13 allergen	-	4e+0	At3g07830	polygalacturonase, putative / pectinase, putative	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.94	Zm.355.1.S1_at	AF034944.1	translation initiation factor1	-	1e-32	At1g54290	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.4	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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