CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.3783.1.S1_at

Gene name Betaine aldehyde dehydrogenase
Homology with Arabidopsis Similar to At3g48170: ALDH10A9 (HF=6e-4)

Module size 13 genes

NF 0.36

%ile 37.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.0 0.98 Zm.3783.1.S1_at AW331211 Betaine aldehyde dehydrogenase - 6e-4 At3g48170 ALDH10A9 O.I. H.G. S.X.
0.44 55.7 0.99 Zm.6195.1.A1_x_at AI668513 hypothetical protein LOC100275106 - 4e+0 At4g17790 - O.I. H.G. S.X.
0.43 52.8 0.99 Zm.6894.1.A1_at BM380620 - - 7e-47 At1g69830 AMY3 (ALPHA-AMYLASE-LIKE 3) O.I. H.G. S.X.
0.43 52.8 0.99 Zm.583.1.S1_at AF305892.1 tangled1 - 3e-1 At1g21350 antioxidant/ oxidoreductase O.I. H.G. S.X.
0.40 48.5 0.99 Zm.8586.1.A1_at BM338441 - - 1e+0 At3g13227 serine-rich protein-related O.I. H.G. S.X.
0.38 44.2 0.99 Zm.15891.2.A1_at BM267660 60S ribosomal protein L13-2 - 7e-31 At5g23900 60S ribosomal protein L13 (RPL13D) O.I. H.G. S.X.
0.32 33.4 0.99 ZmAffx.1194.1.A1_at BE025369 - - 4e+0 At5g59990 - O.I. H.G. S.X.
0.30 29.8 0.99 Zm.12306.1.S1_at CO517988 hypothetical protein LOC100216558 - 5e-2 At5g19680 leucine-rich repeat family protein O.I. H.G. S.X.
0.27 24.6 0.99 Zm.16049.1.S1_at BM888637 40S ribosomal protein S28 - 8e-5 At5g03850 40S ribosomal protein S28 (RPS28B) O.I. H.G. S.X.
0.25 21.3 0.99 Zm.6399.1.A1_at CF630978 hypothetical protein LOC100277208 - 9e-2 At2g38646 unknown protein O.I. H.G. S.X.
0.25 21.3 0.99 ZmAffx.1083.1.A1_at AI974922 - - 1e+0 At1g59830 PP2A-1 O.I. H.G. S.X.
0.20 14.2 0.99 ZmAffx.813.1.A1_at AI770422 - - 2e-1 At3g49570 LSU3 (RESPONSE TO LOW SULFUR 3) O.I. H.G. S.X.
0.20 14.2 0.99 Zm.13899.1.A1_at AF099383.1 R2R3MYB-domain protein - 6e-2 At4g37780 MYB87 (MYB DOMAIN PROTEIN 87) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.0 94.0 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
2.7 93.2 GSM253281 ZM_8d_SG200_3Alu_II GSE10023 Maize gene expression during infection with Ustilago maydis
2.6 92.9 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
2.5 92.6 GSM202320 B73 19 day after pollination embryo tissue, biological replicate 3 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.5 92.6 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3 91.7 GSM162266 Wild type 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.3 91.7 GSM202318 B73xMo17 19 day after pollination embryo tissue, biological replicate 2 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.3 91.7 GSM202303 Mo17 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.2 91.3 GSM202310 B73 19 day after pollination embryo tissue, biological replicate 1 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.2 91.3 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage