Co-expression analysis

Gene ID Zm.3780.1.S1_at
Gene name low-molecular-weight cysteine-rich protein LCR69
Homology with ArabidopsisSimilar to At1g47317: - (HF=9e-2)
Module size 6 genes
NF 0.67
%ile 89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.98Zm.3780.1.S1_atAW438304low-molecular-weight cysteine-rich protein LCR69-9e-2At1g47317-O.I.H.G.S.X.
0.6785.80.98Zm.4846.1.A1_atBQ538226cyclin B2-3e-7At1g76310CYCB2O.I.H.G.S.X.
0.6785.80.98Zm.4845.1.S1_x_atCD442886alcohol dehydrogenase1 /// syntaxin-related protein KNOLLE-4e-5At4g03330SYP123 (SYNTAXIN OF PLANTS 123)O.I.H.G.S.X.
0.6179.50.97Zm.14138.2.A1_atCD219182hypothetical protein LOC100275347-3e-9At1g56423unknown proteinO.I.H.G.S.X.
0.5571.60.97Zm.6196.2.S1_atAI677134--3e+0At5g26880tRNA/rRNA methyltransferase (SpoU) family proteinO.I.H.G.S.X.
0.4759.90.98Zm.9411.1.S1_atCA827391SNF1-related protein kinase regulatory subunit beta-2-4e-1At4g26150CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.95Zm.5193.1.A1_atAI612356chitin-inducible gibberellin-responsive protein 2-1e+0At5g51210OLEO3 (OLEOSIN3)O.I.H.G.S.X.
0.6785.80.96Zm.5730.1.A1_atAI932025Ser/Thr protein phosphatase family-1e+0At1g01820PEX11C (PEROXIN 11C)O.I.H.G.S.X.
0.5571.60.96Zm.3614.1.S1_atBM332537hypothetical protein LOC100277725-8e+0At5g19250unknown proteinO.I.H.G.S.X.
0.5571.60.97Zm.4845.2.S1_atAI833522--3e+0At1g08560SYP111 (SYNTAXIN OF PLANTS 111)O.I.H.G.S.X.
0.5369.10.97Zm.14456.2.S1_a_atCA399302allyl alcohol dehydrogenase-like protein-2e-5At2g36620RPL24A (ribosomal protein L24)O.I.H.G.S.X.
0.5065.70.97Zm.11998.1.S1_atBM382532--1e-1At3g05490RALFL22 (ralf-like 22)O.I.H.G.S.X.
0.5065.70.97Zm.5757.1.A1_atAI637260laccase 1-5e-4At5g01040LAC8 (laccase 8)O.I.H.G.S.X.
0.4759.90.97Zm.5276.1.A1_atAY108798.1brain protein 44-like-2e-5At5g20090unknown proteinO.I.H.G.S.X.
0.4658.40.96Zm.3434.1.A1_atAY105790.1Hypothetical protein LOC100194272-7e-1At4g08260protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.4658.40.97Zm.1659.1.A1_atBG316738hypothetical protein LOC100194135-3e+0At1g79010NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)O.I.H.G.S.X.
0.4352.80.97Zm.807.1.A1_atBG836005hypothetical protein LOC100216722-5e-2At4g14880OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)O.I.H.G.S.X.
0.4352.80.97Zm.15465.1.S1_atCD436630--6e-47At2g25660emb2410 (embryo defective 2410)O.I.H.G.S.X.
0.4048.50.97Zm.4815.1.A1_atAI746001--1e+0At5g14170CHC1O.I.H.G.S.X.
0.4048.50.97Zm.6057.1.S1_atCD437092glycine-rich protein 2b-5e-1At4g38680GRP2 (GLYCINE RICH PROTEIN 2)O.I.H.G.S.X.
0.3844.20.95Zm.9321.1.A1_atAY108492.1hypothetical protein LOC100274067-5e-7At5g26570ATGWD3O.I.H.G.S.X.
0.3844.20.98Zm.13808.2.A1_a_atAI665043--4e-7At4g03240FH (FRATAXIN HOMOLOG)O.I.H.G.S.X.
0.3641.30.97Zm.10243.1.S1_atCF627054--1e+0At1g06320unknown proteinO.I.H.G.S.X.
0.3538.90.97Zm.2108.1.A1_atCF626550--2e+0At1g72690unknown proteinO.I.H.G.S.X.
0.3538.90.96Zm.6456.1.A1_atAY107553.1--2e+0At4g11175translation initiation factor IF-1, chloroplast, putativeO.I.H.G.S.X.
0.3336.00.97Zm.13601.1.S1_atAY107674.1--6e+0At5g44740POLH (Y-FAMILT DNA POLYMERASE H)O.I.H.G.S.X.
0.3336.00.97Zm.17701.1.S1_atCK370965hypothetical protein LOC100278172-4e-1At4g19400actin bindingO.I.H.G.S.X.
0.3233.40.95Zm.3550.1.A1_atCF624216sucrose synthase1-8e-12At3g43190SUS4O.I.H.G.S.X.
0.3233.40.96Zm.12770.1.S1_atCA398540translation initiation factor eIF-2B alpha subunit-1e-5At1g72340eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinO.I.H.G.S.X.
0.3131.60.97Zm.741.1.A1_atAW287831kelch motif family protein-8e-3At1g14330kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.3131.60.98Zm.10125.2.A1_x_atBM380760cytidine/deoxycytidylate deaminase family protein-4e+0At2g46230-O.I.H.G.S.X.
0.3029.80.96Zm.8478.2.A1_x_atBM381399hypothetical protein LOC100275408-1e+0At3g27890NQR (NADPH:QUINONE OXIDOREDUCTASE)O.I.H.G.S.X.
0.2828.10.97Zm.5870.1.S1_atBF729179hypothetical protein LOC100272552-1e+0At3g26147unknown proteinO.I.H.G.S.X.
0.2724.60.97Zm.14114.1.A1_atAY104741.1C-terminal peptide-binding protein 1-6e-3At1g48580unknown proteinO.I.H.G.S.X.
0.2622.70.96Zm.12183.1.A1_atAW065430--1e+0At1g12020unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.799.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
24.399.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
21.699.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
21.499.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.299.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.199.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.599.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.799.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.499.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320460protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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