Co-expression analysis

Gene ID	Zm.3780.1.S1_at
Gene name	low-molecular-weight cysteine-rich protein LCR69
Homology with Arabidopsis	Similar to At1g47317: - (HF=9e-2)
Module size	6 genes
NF	0.67
%ile	89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.98	Zm.3780.1.S1_at	AW438304	low-molecular-weight cysteine-rich protein LCR69	-	9e-2	At1g47317	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.4846.1.A1_at	BQ538226	cyclin B2	-	3e-7	At1g76310	CYCB2	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.4845.1.S1_x_at	CD442886	alcohol dehydrogenase1 /// syntaxin-related protein KNOLLE	-	4e-5	At4g03330	SYP123 (SYNTAXIN OF PLANTS 123)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.97	Zm.14138.2.A1_at	CD219182	hypothetical protein LOC100275347	-	3e-9	At1g56423	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.6196.2.S1_at	AI677134	-	-	3e+0	At5g26880	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.9411.1.S1_at	CA827391	SNF1-related protein kinase regulatory subunit beta-2	-	4e-1	At4g26150	CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
25.7	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.3	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.6	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.5	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1616567_at, orthologous to the query gene, Zm.3780.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1616567_at	At1g47317	hypothetical protein LOC100254180	-	8e-1	At4g29860	EMB2757 (EMBRYO DEFECTIVE 2757)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1610034_at	At1g47317	auxin-binding protein 1	-	5e-13	At4g02980	ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.13	13.3	1610844_at	At1g47317	hypothetical LOC100257700	-	5e-18	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	O.I.	H.G.	S.X.	Please select
0.08	8.5	1612896_at	At1g47317	hypothetical protein LOC100264259	-	1e+0	At5g42470	-	O.I.	H.G.	S.X.	Please select
0.07	7.8	1616408_a_at	At1g47317	hypothetical protein LOC100251641	-	2e+0	At2g14935	LCR40 (Low-molecular-weight cysteine-rich 40)	O.I.	H.G.	S.X.	Please select
0.04	5.2	1616842_s_at	At1g47317	hypothetical protein LOC100248125	-	5e-1	At3g27080	TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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